Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QUE90_RS24985 | Genome accession | NZ_AP028041 |
| Coordinates | 5199893..5200429 (-) | Length | 178 a.a. |
| NCBI ID | WP_039077898.1 | Uniprot ID | - |
| Organism | Phytobacter diazotrophicus strain TA9730 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5194893..5205429
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE90_RS24965 (PDTA9730_49360) | soxS | 5195229..5195552 (+) | 324 | WP_125125504.1 | superoxide response transcriptional regulator SoxS | - |
| QUE90_RS24970 (PDTA9730_49370) | - | 5195568..5197139 (-) | 1572 | WP_039077895.1 | EAL domain-containing protein | - |
| QUE90_RS24975 (PDTA9730_49380) | - | 5197480..5198883 (-) | 1404 | WP_071194347.1 | sensor domain-containing diguanylate cyclase | - |
| QUE90_RS24980 (PDTA9730_49390) | - | 5199437..5199718 (+) | 282 | WP_039077897.1 | YjcB family protein | - |
| QUE90_RS24985 (PDTA9730_49400) | ssb | 5199893..5200429 (-) | 537 | WP_039077898.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| QUE90_RS24990 (PDTA9730_49410) | uvrA | 5200681..5203506 (+) | 2826 | WP_039077899.1 | excinuclease ABC subunit UvrA | - |
| QUE90_RS24995 (PDTA9730_49420) | - | 5203520..5203888 (-) | 369 | WP_125125505.1 | MmcQ/YjbR family DNA-binding protein | - |
| QUE90_RS25000 (PDTA9730_49430) | - | 5203891..5204307 (-) | 417 | WP_039077901.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| QUE90_RS25005 (PDTA9730_49440) | aphA | 5204411..5205115 (-) | 705 | WP_039077902.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18881.93 Da Isoelectric Point: 5.2456
>NTDB_id=103293 QUE90_RS24985 WP_039077898.1 5199893..5200429(-) (ssb) [Phytobacter diazotrophicus strain TA9730]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQGQQGGWGQPQQPQGGNQFSGGAQSRPQQS
APAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGNMGGGQGQQGGWGQPQQPQGGNQFSGGAQSRPQQS
APAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=103293 QUE90_RS24985 WP_039077898.1 5199893..5200429(-) (ssb) [Phytobacter diazotrophicus strain TA9730]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCGACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAGTACCTGCGTAAAGGTTCTCAGGTCTACATT
GAGGGTCAATTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCCGAGAAATACACCACCGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGTGGCCGTCAGGGTGGCGGTGCTCCGGCTGGCGGCAATATGGGCGGCGGCCAGGGCCAGC
AGGGCGGTTGGGGCCAACCTCAGCAGCCGCAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCACAGCAGTCT
GCGCCGGCACCGTCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
TGGTGCAGTGGCCAACATTACGCTGGCGACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCGGTGAGTACCTGCGTAAAGGTTCTCAGGTCTACATT
GAGGGTCAATTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCCGAGAAATACACCACCGAAGTCGTGGTTAACGTGGG
CGGCACCATGCAGATGCTCGGTGGCCGTCAGGGTGGCGGTGCTCCGGCTGGCGGCAATATGGGCGGCGGCCAGGGCCAGC
AGGGCGGTTGGGGCCAACCTCAGCAGCCGCAGGGCGGTAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCACAGCAGTCT
GCGCCGGCACCGTCTAACGAACCGCCGATGGACTTCGACGACGATATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
75 |
100 |
0.758 |
| ssb | Glaesserella parasuis strain SC1401 |
56.383 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
46.154 |
100 |
0.472 |
| ssb | Neisseria gonorrhoeae MS11 |
46.154 |
100 |
0.472 |