Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   DYY98_RS03425 Genome accession   NZ_LT992436
Coordinates   688383..689069 (-) Length   228 a.a.
NCBI ID   WP_000692885.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-REV     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 683383..694069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY98_RS03380 rpmA 684156..684440 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  DYY98_RS03385 - 684452..684772 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  DYY98_RS03390 rplU 684778..685086 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  DYY98_RS03395 mreD 685322..685852 (-) 531 WP_001259927.1 rod shape-determining protein MreD -
  DYY98_RS03400 mreC 685852..686694 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  DYY98_RS03405 - 686893..687012 (-) 120 WP_000840600.1 hypothetical protein -
  DYY98_RS03410 - 687086..687559 (-) 474 WP_001236734.1 DUF4930 family protein -
  DYY98_RS03415 - 687719..687916 (+) 198 WP_000025835.1 hypothetical protein -
  DYY98_RS03420 - 688031..688315 (-) 285 WP_000171863.1 hypothetical protein -
  DYY98_RS03425 ysxA/radC 688383..689069 (-) 687 WP_000692885.1 RadC family protein Machinery gene
  DYY98_RS03430 - 689066..689773 (-) 708 WP_000261124.1 prepilin peptidase -
  DYY98_RS03440 - 690041..691312 (-) 1272 WP_001108332.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  DYY98_RS03445 - 691325..693955 (-) 2631 WP_000425356.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25293.20 Da        Isoelectric Point: 6.7572

>NTDB_id=1032865 DYY98_RS03425 WP_000692885.1 688383..689069(-) (ysxA/radC) [Staphylococcus aureus isolate 1549-REV]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTIRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1032865 DYY98_RS03425 WP_000692885.1 688383..689069(-) (ysxA/radC) [Staphylococcus aureus isolate 1549-REV]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCAGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCATCACAAGAAGATAT
CATAACAACAATAAGATTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377