Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB8E30_RS09085 Genome accession   NZ_CP165965
Coordinates   1720257..1721036 (+) Length   259 a.a.
NCBI ID   WP_369903008.1    Uniprot ID   -
Organism   Bacillus manliponensis strain jeju3-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715257..1726036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS09065 (AB8E30_09070) trmFO 1715905..1717209 (+) 1305 WP_369903005.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB8E30_RS09070 (AB8E30_09075) xerC 1717275..1718174 (+) 900 WP_369903006.1 tyrosine recombinase XerC -
  AB8E30_RS09075 (AB8E30_09080) hslV 1718219..1718761 (+) 543 WP_034635712.1 ATP-dependent protease subunit HslV -
  AB8E30_RS09080 (AB8E30_09085) hslU 1718784..1720181 (+) 1398 WP_369903007.1 ATP-dependent protease ATPase subunit HslU -
  AB8E30_RS09085 (AB8E30_09090) codY 1720257..1721036 (+) 780 WP_369903008.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB8E30_RS09090 (AB8E30_09095) rpsB 1721374..1722075 (+) 702 WP_034635709.1 30S ribosomal protein S2 -
  AB8E30_RS09095 (AB8E30_09100) tsf 1722155..1723042 (+) 888 WP_369903009.1 translation elongation factor Ts -
  AB8E30_RS09100 (AB8E30_09105) pyrH 1723108..1723830 (+) 723 WP_369903010.1 UMP kinase -
  AB8E30_RS09105 (AB8E30_09110) frr 1723833..1724390 (+) 558 WP_369903011.1 ribosome recycling factor -
  AB8E30_RS09110 (AB8E30_09115) - 1724476..1725252 (+) 777 WP_369903012.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.01 Da        Isoelectric Point: 4.7853

>NTDB_id=1032639 AB8E30_RS09085 WP_369903008.1 1720257..1721036(+) (codY) [Bacillus manliponensis strain jeju3-1]
MELLTKTRKLNALLQSAAGKPVNFREMADTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEQYTQSLF
NVTETSSNLGVDSDYTAFPVENRDLFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1032639 AB8E30_RS09085 WP_369903008.1 1720257..1721036(+) (codY) [Bacillus manliponensis strain jeju3-1]
ATGGAATTATTAACAAAAACGAGAAAGTTAAACGCGTTATTACAAAGCGCAGCAGGAAAACCTGTAAACTTCAGAGAAAT
GGCAGATACAATGTGTGAAGTAATTGAAGCGAACGTGTTTGTTGTAAGCCGTCGTGGTAAATTATTAGGATATGCGATTC
ACCAACAAATTGAGAATGAGCGTATGAAGCAAATGCTTGCAGAGCGTCAATTCCCAGAGCAATATACACAAAGTTTATTT
AACGTAACAGAGACTTCCTCTAACTTAGGTGTAGATAGTGATTACACAGCGTTCCCTGTAGAAAACAGAGACTTATTCGG
TCAAGGTTTAACAACAATTGTACCGATTGTTGGTGGCGGTGAGCGTCTAGGTACGCTAGTATTAGCGCGTCTAGGTCAAG
AATTCTTAGATGATGATTTAATTCTTGCTGAGTATAGCTCTACTGTTGTAGGTATGGAGATTTTACGTGAAAAAGCTGAA
GAAATCGAAGAGGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCAATTAGCTCTTTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTTGAAGAGTTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGTGTAGGAATTACAC
GTTCTGTGATCGTAAACGCACTTCGTAAATTAGAGAGTGCTGGTGTAATTGAGTCACGTTCTTTAGGTATGAAGGGAACA
TATATTAAAGTGCTAAATGACAAGTTTTTACACGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment