Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   QUE23_RS07465 Genome accession   NZ_AP028022
Coordinates   1423528..1423791 (-) Length   87 a.a.
NCBI ID   WP_286348430.1    Uniprot ID   -
Organism   Helicobacter sp. NHP21005 strain NHP21-005     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1418528..1428791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE23_RS07440 (NHP21005_15370) - 1418532..1420856 (-) 2325 WP_286348426.1 TonB-dependent receptor family protein -
  QUE23_RS07445 (NHP21005_15380) - 1421033..1421740 (+) 708 WP_286348427.1 outer membrane beta-barrel protein -
  QUE23_RS07450 (NHP21005_15390) fliW 1421788..1422192 (+) 405 WP_286348428.1 flagellar assembly protein FliW -
  QUE23_RS07455 (NHP21005_15400) murG 1422198..1423271 (+) 1074 WP_286349440.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase -
  QUE23_RS07460 (NHP21005_15410) comB3 1423262..1423528 (-) 267 WP_286348429.1 competence protein ComB Machinery gene
  QUE23_RS07465 (NHP21005_15420) comB2 1423528..1423791 (-) 264 WP_286348430.1 TrbC/VirB2 family protein Machinery gene
  QUE23_RS07470 (NHP21005_15430) - 1424059..1424862 (+) 804 WP_286348431.1 HrcA family transcriptional regulator -
  QUE23_RS07475 (NHP21005_15440) grpE 1424853..1425428 (+) 576 WP_286349441.1 nucleotide exchange factor GrpE -
  QUE23_RS07480 (NHP21005_15450) dnaK 1425454..1427322 (+) 1869 WP_286348432.1 molecular chaperone DnaK -
  QUE23_RS07485 tnpA 1427670..1428142 (+) 473 Protein_1469 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10166.18 Da        Isoelectric Point: 7.0050

>NTDB_id=103241 QUE23_RS07465 WP_286348430.1 1423528..1423791(-) (comB2) [Helicobacter sp. NHP21005 strain NHP21-005]
MQWLWVFLILDFLQADGGDHFFKAIEAQLQSNTAKGILMLIFIGIAFYVWRNLDRWRDIFFTILGVVLGIMLFFKAPALA
SWFMGLF

Nucleotide


Download         Length: 264 bp        

>NTDB_id=103241 QUE23_RS07465 WP_286348430.1 1423528..1423791(-) (comB2) [Helicobacter sp. NHP21005 strain NHP21-005]
TTGCAGTGGTTGTGGGTGTTTTTAATCCTAGATTTTTTGCAAGCCGATGGAGGGGATCATTTCTTTAAAGCCATTGAGGC
GCAGCTGCAGAGCAACACGGCTAAGGGCATTTTGATGTTGATTTTTATCGGCATTGCCTTTTATGTGTGGCGCAATTTAG
ATCGCTGGCGGGACATCTTCTTCACGATTTTGGGTGTGGTGCTGGGCATCATGCTCTTTTTTAAAGCCCCGGCTTTGGCT
TCGTGGTTCATGGGATTGTTTTGA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(16-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

73.973

83.908

0.621

Multiple sequence alignment