Detailed information    

insolico Bioinformatically predicted

Overview

Name   pknB   Type   Regulator
Locus tag   LSAF01_RS03505 Genome accession   NZ_LT960777
Coordinates   695553..697436 (+) Length   627 a.a.
NCBI ID   WP_099947639.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FLEC01     
Function   modulate the activity of ComDE; modulate the activity of VicKR (predicted from homology)   
Competence regulation

Genomic Context

Location: 690553..702436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAF01_RS03490 (LSAF01_0699) fmt 692499..693455 (+) 957 WP_099947313.1 methionyl-tRNA formyltransferase -
  LSAF01_RS03495 (LSAF01_0700) rsmB 693445..694788 (+) 1344 WP_056948336.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LSAF01_RS03500 (LSAF01_0701) - 694810..695556 (+) 747 WP_056948338.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  LSAF01_RS03505 (LSAF01_0702) pknB 695553..697436 (+) 1884 WP_099947639.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  LSAF01_RS03510 (LSAF01_0703) rsgA 697536..698435 (+) 900 WP_011374402.1 ribosome small subunit-dependent GTPase A -
  LSAF01_RS03515 (LSAF01_0704) rpe 698459..699121 (+) 663 WP_011374403.1 ribulose-phosphate 3-epimerase -
  LSAF01_RS03520 (LSAF01_0705) - 699108..699758 (+) 651 WP_011374404.1 thiamine diphosphokinase -
  LSAF01_RS03525 (LSAF01_0706) rpmB 700107..700292 (-) 186 WP_004265581.1 50S ribosomal protein L28 -
  LSAF01_RS03530 (LSAF01_0707) - 700595..700957 (+) 363 WP_011374405.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 68119.69 Da        Isoelectric Point: 5.8381

>NTDB_id=1032271 LSAF01_RS03505 WP_099947639.1 695553..697436(+) (pknB) [Latilactobacillus sakei strain FLEC01]
MMETGYAVAGRYKIIRPIGEGGMANVYLAQDLILDRQVAVKVLRLDLRNDPDTVRRFTREALATTELNHPNIVSIYDVGE
ENSMQYIIMEYIKGTDLKKYIVEHFPIPYQRVIDIMTQILSAVQNAHAHNIIHRDLKPQNILVDEDGNVKISDFGIAIAL
SETAMTQTNTLLGSVHYLSPEQARGSMATKRSDIYSLGIVLYELLTGMVPFEGESAVSIAIKHFQDEVPPVRNYDPRIPQ
ALENVVLKATAKDPDERYSGVDAMMADLATSLSASRAHEPKCVPSKADDLSETKVIPALDPEGITQTNNDEEQVKEAEST
QKKVKKPAKSKRKWWLLGGGVVLLLLLATVIAFAVQGSEVTVPDLTDMTQQNAESALTDKKLKVGTVQKTTSQKYSKGHV
IRTTPKAGLSVKSKSTVNLIVSSGRQKYKIKDYTNQAYSDVRDALKDKGLTVKRKYQSSSEVSPGLIIDQSIAAGKRVVP
SKTTITLTVSSGKPGFALHNLSNYTKQGIQDYAAQNGLTVVFSEEYSSSISEGMVISQSPASGTMVQEGDSVSVILSKGE
QPTEHHSIVTSSSNSVIESSAPESSQSSESSASESESESESESESESASESISSSASQSSQSSVQSK

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=1032271 LSAF01_RS03505 WP_099947639.1 695553..697436(+) (pknB) [Latilactobacillus sakei strain FLEC01]
ATGATGGAAACAGGGTACGCTGTAGCGGGGCGTTATAAGATTATTCGGCCCATTGGTGAAGGCGGCATGGCTAATGTTTA
TTTGGCGCAGGATCTAATTTTAGACCGGCAAGTGGCAGTTAAAGTTTTACGATTAGATCTCCGAAATGATCCGGATACAG
TCCGACGGTTTACGCGAGAAGCGTTGGCAACGACTGAATTAAATCATCCGAATATTGTTAGTATTTACGATGTTGGTGAA
GAAAACAGTATGCAGTACATCATTATGGAATATATTAAGGGCACCGATCTTAAGAAATATATCGTGGAACACTTTCCAAT
TCCTTATCAACGTGTAATTGATATTATGACGCAGATTTTATCTGCGGTTCAAAACGCACATGCGCATAATATTATTCATC
GGGATTTAAAACCACAAAATATTTTGGTTGATGAAGACGGCAATGTTAAGATTAGTGACTTTGGGATTGCGATTGCGCTC
AGCGAAACAGCGATGACTCAGACCAACACGTTGTTGGGGTCTGTGCATTATCTCTCACCGGAACAGGCAAGAGGCTCGAT
GGCGACGAAACGGTCTGATATTTACTCGTTAGGAATTGTGCTTTATGAGTTATTGACGGGGATGGTGCCTTTTGAAGGCG
AGTCCGCTGTTTCAATTGCGATTAAGCATTTCCAAGATGAAGTCCCACCAGTACGCAACTATGATCCACGTATTCCGCAA
GCCCTGGAAAATGTCGTTTTAAAAGCGACTGCCAAGGATCCGGATGAACGCTATAGTGGTGTTGATGCCATGATGGCTGA
CTTAGCAACTTCTTTATCAGCTAGTCGTGCGCACGAACCTAAATGTGTGCCATCAAAAGCGGATGATTTGAGTGAGACTA
AGGTGATTCCTGCACTAGATCCAGAAGGCATTACGCAAACCAACAACGATGAGGAACAAGTTAAAGAAGCAGAATCAACT
CAGAAAAAGGTTAAAAAGCCAGCTAAGTCTAAGCGTAAGTGGTGGCTACTAGGTGGCGGTGTTGTTTTATTGCTGTTATT
AGCAACGGTGATTGCTTTTGCAGTTCAGGGGAGCGAAGTAACCGTCCCTGATTTAACGGATATGACACAACAAAATGCGG
AATCTGCTTTGACCGATAAAAAACTGAAAGTCGGCACGGTTCAAAAAACAACGAGTCAGAAATACAGTAAGGGCCACGTC
ATTCGAACAACACCTAAAGCGGGCCTGAGTGTAAAATCAAAAAGTACGGTTAATTTAATTGTCAGTTCAGGACGCCAAAA
GTATAAGATTAAAGACTATACGAACCAAGCATATAGTGATGTTCGGGATGCTTTGAAGGATAAGGGCTTGACCGTTAAAC
GGAAATACCAAAGTTCATCTGAAGTGAGTCCTGGGTTGATTATCGATCAAAGTATTGCGGCTGGCAAAAGGGTCGTTCCA
AGTAAAACGACGATTACCTTAACAGTCAGCAGCGGCAAACCTGGTTTTGCATTGCATAATCTAAGCAACTATACAAAGCA
AGGGATTCAAGACTATGCTGCACAAAATGGTTTAACGGTCGTATTCTCTGAAGAATATTCATCAAGTATTTCTGAAGGAA
TGGTAATCAGTCAATCGCCTGCAAGTGGTACAATGGTTCAAGAAGGTGATAGCGTAAGCGTTATCCTTTCAAAAGGCGAG
CAACCAACTGAACATCATTCTATTGTGACGTCGAGTTCAAATTCAGTTATCGAGTCGAGTGCGCCTGAATCAAGTCAATC
GAGTGAAAGTAGCGCGAGTGAGTCAGAGAGCGAATCAGAGAGTGAATCGGAAAGCGAATCAGCAAGTGAATCGATCAGTA
GTTCAGCTAGTCAAAGTAGTCAATCGAGCGTTCAATCAAAGTAA

Domains

Predicted by InterProScan.

PASTA domain (PASTA)

(429-490)

PASTA domain (PASTA)

(360-422)

PASTA domain (PASTA)

(500-558)

Protein kinase domain (Pkinase)

(12-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pknB Streptococcus mutans UA159

42.222

93.301

0.394
  stkP Streptococcus pneumoniae TIGR4

40.304

94.577

0.381
  stkP Streptococcus pneumoniae D39

40.135

94.577

0.38
  stkP Streptococcus pneumoniae R6

40.135

94.577

0.38
  stkP Streptococcus pneumoniae Rx1

39.966

94.577

0.378

Multiple sequence alignment