Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB3D65_RS05645 Genome accession   NZ_CP165606
Coordinates   1055216..1055824 (-) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain BP1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050216..1060824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3D65_RS05625 (AB3D65_05625) dnaD 1050452..1051150 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  AB3D65_RS05630 (AB3D65_05630) nth 1051169..1051828 (+) 660 WP_007612187.1 endonuclease III -
  AB3D65_RS05635 (AB3D65_05635) - 1051825..1052316 (+) 492 WP_032870046.1 YpoC family protein -
  AB3D65_RS05640 (AB3D65_05640) - 1052394..1055177 (-) 2784 WP_369546531.1 PBP1A family penicillin-binding protein -
  AB3D65_RS05645 (AB3D65_05645) recU 1055216..1055824 (-) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  AB3D65_RS05650 (AB3D65_05650) - 1055866..1056828 (+) 963 WP_369546532.1 DUF2515 domain-containing protein -
  AB3D65_RS05655 (AB3D65_05655) sspM 1056872..1056976 (-) 105 WP_013352643.1 acid-soluble spore protein SspM -
  AB3D65_RS05660 (AB3D65_05660) - 1057182..1057427 (+) 246 WP_007409491.1 DUF5446 family protein -
  AB3D65_RS05665 (AB3D65_05665) - 1057473..1057841 (+) 369 WP_369546533.1 YppE family protein -
  AB3D65_RS05670 (AB3D65_05670) - 1057880..1058062 (-) 183 WP_369546534.1 YppF family protein -
  AB3D65_RS05675 (AB3D65_05675) - 1058249..1058683 (+) 435 WP_151296429.1 YppG family protein -
  AB3D65_RS05680 (AB3D65_05680) - 1058713..1059126 (-) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  AB3D65_RS05685 (AB3D65_05685) - 1059265..1059771 (+) 507 WP_012117833.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=1030793 AB3D65_RS05645 WP_012117837.1 1055216..1055824(-) (recU) [Bacillus velezensis strain BP1]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1030793 AB3D65_RS05645 WP_012117837.1 1055216..1055824(-) (recU) [Bacillus velezensis strain BP1]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment