Detailed information NTG1030493

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: AB5Z16_RS02010
• Genome accession: NZ_CP163544
• Coordinates: 430517..431665 (+)
• Length: 382 a.a.
• NCBI ID: WP_003100959.1
• Uniprot ID: G3XCX3
• Organism: Pseudomonas aeruginosa strain PAHT-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 425517..436665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5Z16_RS01985 (AB5Z16_01985)	-	426668..426964 (-)	297	WP_031655952.1	DUF167 domain-containing protein	-
AB5Z16_RS01990 (AB5Z16_01990)	-	426961..427554 (-)	594	WP_023118976.1	YggT family protein	-
AB5Z16_RS01995 (AB5Z16_01995)	proC	427565..428386 (-)	822	WP_128663368.1	pyrroline-5-carboxylate reductase	-
AB5Z16_RS02000 (AB5Z16_02000)	-	428398..429090 (-)	693	WP_003084549.1	YggS family pyridoxal phosphate-dependent enzyme	-
AB5Z16_RS02005 (AB5Z16_02005)	pilT	429305..430339 (+)	1035	WP_003084552.1	type IV pilus twitching motility protein PilT	Machinery gene
AB5Z16_RS02010 (AB5Z16_02010)	pilU	430517..431665 (+)	1149	WP_003100959.1	type IV pilus ATPase PilU	Machinery gene
AB5Z16_RS02015 (AB5Z16_02015)	czcD	431673..432572 (-)	900	WP_003100957.1	CDF family zinc transporter CzcD	-
AB5Z16_RS02020 (AB5Z16_02020)	-	432727..433131 (+)	405	WP_003084560.1	NINE protein	-
AB5Z16_RS02025 (AB5Z16_02025)	-	433374..434747 (+)	1374	WP_003084562.1	pyridoxal-phosphate dependent enzyme	-
AB5Z16_RS02030 (AB5Z16_02030)	-	434744..435928 (+)	1185	WP_003110017.1	cystathionine gamma-synthase	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 42532.81 Da
• Isoelectric Point: 6.7792

>NTDB_id=1030493 AB5Z16_RS02010 WP_003100959.1 430517..431665(+) (pilU) [Pseudomonas aeruginosa strain PAHT-1]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGRVMPVTKTPLSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLEELKLPEILKKLALTKRGLVIFVGATGTGKSTSLAAMIGYRNKNSTGHIISIED
PIEYIHQHQGCIVTQREVGLDTDSFEVALKNTLRQAPDVIMIGEVRSRETMDHAVAFAETGHLCLATLHANNANQALERI
IHFFPADRHGQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLLNTPLAADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYQLYTQGEITYEDALAHADSANDLRLMIKLGSESDADHLSSLTQGLSLEITDDDPAGRRFR

Nucleotide

• Length: 1149 bp

>NTDB_id=1030493 AB5Z16_RS02010 WP_003100959.1 430517..431665(+) (pilU) [Pseudomonas aeruginosa strain PAHT-1]
ATGGAATTCGAAAAGCTGCTGCGCCTGATGGTGGAAAAGGGCGGCTCCGACCTGTTCATCACCGCCGGCGTACCGCCGTC
GATGAAGGTCAACGGCCGGGTGATGCCGGTGACCAAGACGCCGCTGTCGCCGGAGCAGACCCGCGAGACCGTGCTAGGCG
TGATGAACGAGCAGCAGCGCCGCGATTTCGCCGAGAACCATGAGTGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGC
TTCCGGGTCAGTGCCTTCTACCAGCGCAACCTGGTGGGCATGGTATTGCGCCGGATCGAGACCAACATCCCGACCCTGGA
AGAGCTGAAGCTCCCGGAAATCCTCAAGAAGCTGGCGCTGACCAAGCGCGGCCTGGTGATCTTCGTCGGCGCCACCGGCA
CCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACAAGAACTCCACCGGGCACATCATCTCCATCGAGGAC
CCGATCGAGTACATCCACCAGCACCAGGGCTGCATCGTCACCCAGCGCGAGGTGGGGCTGGACACCGACTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCTCGCGGGAGACCATGGACCACG
CCGTGGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCGACCCTGCACGCGAACAACGCCAACCAGGCGCTGGAGCGGATC
ATCCACTTCTTCCCGGCCGACCGTCATGGCCAGGTGTGGATGGACCTGTCGCTGAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCCGACGGCAAGGGGCGGCGGGCGGTGATCGAGGTGCTGCTGAACACCCCGCTGGCCGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTGAAGCCGCTGATGAAGCGCTCCACCGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACCAGCTCTACACCCAGGGCGAGATCACCTACGAGGACGCCCTGGCCCACGCCGACTCGGCCAACGACCTGCGTCT
GATGATCAAGCTCGGTTCGGAAAGCGACGCCGACCACCTGTCGAGCCTGACCCAGGGCCTGAGCCTGGAAATCACCGACG
ACGACCCTGCCGGCCGGCGCTTCCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-270)

3D structure

• AlphaFold DB: G3XCX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	88.482	100	0.885
pilU	Acinetobacter baylyi ADP1	65.266	93.455	0.61
pilU	Vibrio cholerae strain A1552	60.286	91.623	0.552
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.068	88.743	0.382