Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BT137_RS13345 Genome accession   NZ_LT632617
Coordinates   2936284..2937534 (+) Length   416 a.a.
NCBI ID   WP_027265565.1    Uniprot ID   -
Organism   Legionella pneumophila strain ST42 isolate ST42     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2931284..2942534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BT137_RS13310 (EUL120_02652) - 2931612..2931911 (-) 300 WP_010948422.1 ArsR/SmtB family transcription factor -
  BT137_RS13315 (EUL120_02653) - 2932146..2932490 (-) 345 WP_027229005.1 hypothetical protein -
  BT137_RS13320 (EUL120_02654) - 2932607..2933236 (+) 630 WP_010948424.1 trimeric intracellular cation channel family protein -
  BT137_RS13325 (EUL120_02655) - 2933445..2933939 (-) 495 WP_010948425.1 peptidylprolyl isomerase -
  BT137_RS13330 (EUL120_02656) tgt 2933966..2935117 (-) 1152 WP_027265563.1 tRNA guanosine(34) transglycosylase Tgt -
  BT137_RS13335 (EUL120_02657) - 2935179..2935670 (-) 492 WP_027265564.1 disulfide bond formation protein B -
  BT137_RS13340 (EUL120_02658) - 2935667..2936095 (-) 429 WP_011216591.1 c-type cytochrome -
  BT137_RS13345 (EUL120_02659) cqsA 2936284..2937534 (+) 1251 WP_027265565.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  BT137_RS13350 (EUL120_02660) - 2937616..2938641 (-) 1026 WP_010948430.1 response regulator -
  BT137_RS13355 (EUL120_02661) - 2938923..2939486 (+) 564 WP_040147738.1 HdeD family acid-resistance protein -
  BT137_RS13360 (EUL120_02662) - 2939574..2940863 (-) 1290 WP_038839724.1 sensor histidine kinase -
  BT137_RS13365 (EUL120_02663) hemC 2941254..2942183 (+) 930 WP_027265568.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46134.72 Da        Isoelectric Point: 9.2711

>NTDB_id=1029906 BT137_RS13345 WP_027265565.1 2936284..2937534(+) (cqsA) [Legionella pneumophila strain ST42 isolate ST42]
MSNTEYQTIDNKTQYINGKEKHQNHAYPEYINHSMEKYYEGRVNKSWQGKHILKGKTPTANSLIFSSNDYLNISQHPQLI
KAQIAAMQKYGNGQMQSAVFLNNSSFLLSQCEKKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKPVPFLHNSVDSLKKRIEHHGPGIIAVDSIYSTLGTISPLADYADIARKFKCLLIVDESHSLGTHGSQGKGMV
AKLGLSSQIDIITASLAKALSGRGGIITGDRQLIEYIRYSSLPSIFSSALMPHDLAGFSASLEIITQEEWRRAKLQTNAD
FLREALSCEGINIGSSGSQIIPLVTGSEANTLWLRDELEKEDLFGAVFCSPATPKNKCLIRLSISAHHEKSDLLRVIECL
VRLARKRPDIPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=1029906 BT137_RS13345 WP_027265565.1 2936284..2937534(+) (cqsA) [Legionella pneumophila strain ST42 isolate ST42]
ATGAGCAATACAGAATACCAAACAATTGATAACAAGACTCAATATATCAATGGAAAAGAAAAACATCAAAACCATGCTTA
TCCTGAGTACATCAATCATTCCATGGAAAAATATTACGAGGGACGAGTCAATAAATCCTGGCAAGGGAAACACATACTTA
AAGGCAAAACCCCGACTGCAAATTCACTGATTTTTTCGAGCAATGATTATTTAAACATCAGTCAACATCCGCAATTAATT
AAAGCGCAAATTGCTGCGATGCAAAAATATGGTAATGGTCAAATGCAATCTGCTGTATTTTTAAATAACAGCTCTTTTTT
GCTCAGCCAATGTGAAAAGAAATTCAGTTCCTTTTTAAATTATTCTGCGGCACTGCTCACTCAATCAGGCTGGAGCGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTACAATACACCAGTGTATCTGGATTTTTATGCCCATATGTCTTTTTGGTCT
GGTGTAAAAGCAGCAAGAGCCAAACCTGTACCGTTTCTACATAATTCAGTCGATTCACTAAAAAAACGAATTGAGCACCA
TGGGCCAGGAATAATTGCAGTAGATTCTATTTATAGTACGCTGGGTACGATTAGTCCATTGGCTGACTATGCTGACATTG
CAAGAAAATTCAAATGTTTGCTCATCGTCGATGAATCTCATTCATTAGGTACGCATGGTTCGCAAGGCAAGGGGATGGTA
GCTAAACTGGGATTATCAAGCCAAATAGACATCATAACAGCCAGCCTGGCTAAAGCCTTATCAGGACGGGGAGGCATCAT
TACAGGAGATAGGCAACTTATAGAATATATCAGATATTCATCTCTACCCTCTATTTTTAGTTCTGCTTTAATGCCTCATG
ATTTAGCAGGATTTAGCGCATCATTAGAAATTATTACTCAAGAAGAATGGAGAAGAGCAAAATTACAAACCAATGCTGAT
TTTTTACGAGAAGCCTTATCATGCGAAGGAATTAATATAGGAAGTAGTGGCTCTCAAATAATCCCTTTAGTTACAGGCAG
CGAGGCTAACACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGACCTCTTTGGAGCCGTGTTCTGTTCACCCGCCACTC
CCAAAAATAAATGCCTGATTCGTTTATCCATCAGCGCGCATCACGAAAAATCGGACTTGCTCAGAGTGATTGAGTGCCTG
GTCAGACTTGCAAGAAAAAGACCCGATATTCCTTTGTTTAAGGGTAATTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(63-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

45.699

89.423

0.409