Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   C7R99_RS03035 Genome accession   NZ_LT592153
Coordinates   517281..517946 (+) Length   221 a.a.
NCBI ID   WP_003690897.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_Z     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512281..522946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R99_RS03000 (WHOZ_00546C) cysT 512404..513233 (-) 830 Protein_514 sulfate ABC transporter permease subunit CysT -
  C7R99_RS03005 (WHOZ_00547) - 513419..513751 (+) 333 WP_003687908.1 hypothetical protein -
  C7R99_RS03010 (WHOZ_00548) - 514081..514590 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  C7R99_RS03020 (WHOZ_00549C) - 514822..515403 (-) 582 WP_003690895.1 superoxide dismutase -
  C7R99_RS03030 (WHOZ_00550) dnaB 515567..516973 (+) 1407 WP_003690896.1 replicative DNA helicase -
  C7R99_RS03035 (WHOZ_00551) pilH 517281..517946 (+) 666 WP_003690897.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C7R99_RS03040 (WHOZ_00552) pilV/pilI 517978..518586 (+) 609 WP_106178882.1 type IV pilus modification protein PilV Regulator
  C7R99_RS03045 (WHOZ_00553) pilJ 518583..519524 (+) 942 WP_003690899.1 PilW family protein Machinery gene
  C7R99_RS03050 (WHOZ_00554) pilK 519503..520111 (+) 609 WP_003690900.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C7R99_RS03055 (WHOZ_00555) pilL 520113..520586 (+) 474 WP_025455782.1 PilX family type IV pilin Machinery gene
  C7R99_RS03065 (WHOZ_00556C) - 521198..521643 (-) 446 Protein_524 AzlC family ABC transporter permease -
  C7R99_RS03070 (WHOZ_00557) dut 521809..522261 (+) 453 WP_003690909.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.05 Da        Isoelectric Point: 9.4066

>NTDB_id=1028136 C7R99_RS03035 WP_003690897.1 517281..517946(+) (pilH) [Neisseria gonorrhoeae strain WHO_Z]
MCTRKQQGFTLIELLIVIAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDLGKKEQGMLAFGDKNDNKAYDGDSADVFLRNVVLNDDIKDKRINYTFNHIAFGQTRSTADRVVWTFNQNGTFGYSS
DRNLKNNSKFVYSDGYIQIVLTDAKAVSAGEKKFRSAVVLIDSSGRVEVCPRNDRRAVCQH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1028136 C7R99_RS03035 WP_003690897.1 517281..517946(+) (pilH) [Neisseria gonorrhoeae strain WHO_Z]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATAGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTGGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGTGA
TTCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTCAAACACGGTCGACTGCCGATCGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTCGTCC
GATCGGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGCCGGTGAAAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGAAACG
ATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

82.805

100

0.828

Multiple sequence alignment