Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PA5486_RS11005 Genome accession   NZ_LS998783
Coordinates   2236090..2236413 (+) Length   107 a.a.
NCBI ID   WP_012075039.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2231090..2241413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA5486_RS10990 (PA5486_02128) - 2231890..2232846 (+) 957 WP_012075037.1 UDP-glucose 4-epimerase family protein -
  PA5486_RS10995 (PA5486_02129) - 2232848..2233867 (+) 1020 WP_003150897.1 MraY family glycosyltransferase -
  PA5486_RS11000 (PA5486_02130) - 2233902..2235899 (+) 1998 WP_025297832.1 polysaccharide biosynthesis protein -
  PA5486_RS11005 (PA5486_02131) comEA/comE1 2236090..2236413 (+) 324 WP_012075039.1 ComEA family DNA-binding protein Machinery gene
  PA5486_RS11015 (PA5486_02133) - 2236631..2237827 (-) 1197 WP_012075040.1 amino acid aminotransferase -
  PA5486_RS11020 (PA5486_02134) uvrB 2238014..2240026 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11265.23 Da        Isoelectric Point: 7.1662

>NTDB_id=1027096 PA5486_RS11005 WP_012075039.1 2236090..2236413(+) (comEA/comE1) [Pseudomonas aeruginosa isolate]
MHLIKSALFLILFACLPFSASAAPAAAKPPVVATMPTEASTAEVVNINTADEATLVRGLKGVGEVKAKAIVEYRTAHGPF
VSLDQLLEVKGVGPALLEKNRERIAIE

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1027096 PA5486_RS11005 WP_012075039.1 2236090..2236413(+) (comEA/comE1) [Pseudomonas aeruginosa isolate]
ATGCACCTAATCAAATCCGCCTTGTTCCTCATCCTGTTCGCCTGCCTGCCGTTTTCGGCTTCCGCCGCGCCGGCCGCCGC
CAAGCCTCCGGTGGTCGCGACAATGCCGACGGAGGCGTCGACAGCGGAGGTGGTCAATATCAATACGGCCGACGAGGCGA
CGCTGGTGCGTGGGTTGAAGGGCGTCGGCGAGGTCAAGGCCAAGGCGATCGTCGAATACCGAACGGCTCATGGTCCGTTC
GTTTCGCTGGATCAGTTGCTGGAAGTGAAGGGCGTGGGACCGGCGTTGCTGGAGAAGAACCGGGAGCGGATCGCCATAGA
GTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(42-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

42.308

97.196

0.411
  comEA Vibrio cholerae C6706

40.385

97.196

0.393
  comEA Vibrio cholerae strain A1552

40.385

97.196

0.393
  comE1/comEA Haemophilus influenzae Rd KW20

40.777

96.262

0.393
  comEA Vibrio parahaemolyticus RIMD 2210633

42.268

90.654

0.383
  comEA Acinetobacter baumannii strain A118

30.303

100

0.374
  comEA Acinetobacter baylyi ADP1

54.054

69.159

0.374