Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | AB3L00_RS01635 | Genome accession | NZ_CP162300 |
| Coordinates | 345679..346152 (+) | Length | 157 a.a. |
| NCBI ID | WP_001214058.1 | Uniprot ID | A0A1E3M9I3 |
| Organism | Acinetobacter baumannii strain SIMBA113 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 340679..351152
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3L00_RS01610 (AB3L00_01610) | - | 341142..343247 (-) | 2106 | WP_001117590.1 | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | - |
| AB3L00_RS01615 (AB3L00_01615) | - | 343287..343417 (-) | 131 | Protein_309 | hypothetical protein | - |
| AB3L00_RS01620 (AB3L00_01620) | rpoZ | 343456..343734 (-) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| AB3L00_RS01625 (AB3L00_01625) | gmk | 343807..344436 (-) | 630 | WP_000015937.1 | guanylate kinase | - |
| AB3L00_RS01630 (AB3L00_01630) | ispH | 344559..345509 (+) | 951 | WP_000407064.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| AB3L00_RS01635 (AB3L00_01635) | fimU | 345679..346152 (+) | 474 | WP_001214058.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| AB3L00_RS01640 (AB3L00_01640) | pilV | 346146..346706 (+) | 561 | WP_002194578.1 | type IV pilus modification protein PilV | Machinery gene |
| AB3L00_RS01645 (AB3L00_01645) | pilW | 346707..347708 (+) | 1002 | WP_000079196.1 | PilW family protein | Machinery gene |
| AB3L00_RS01650 (AB3L00_01650) | pilX | 347705..348523 (+) | 819 | WP_000149378.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16823.45 Da Isoelectric Point: 9.3085
>NTDB_id=1024773 AB3L00_RS01635 WP_001214058.1 345679..346152(+) (fimU) [Acinetobacter baumannii strain SIMBA113]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPS
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPS
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=1024773 AB3L00_RS01635 WP_001214058.1 345679..346152(+) (fimU) [Acinetobacter baumannii strain SIMBA113]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCTCT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCTCT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
98.726 |
100 |
0.987 |