Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AB0R65_RS12935 Genome accession   NZ_CP160225
Coordinates   2661955..2662707 (-) Length   250 a.a.
NCBI ID   WP_167340805.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ1284     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2656955..2667707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R65_RS12910 (AB0R65_12910) mreC 2657391..2658254 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  AB0R65_RS12915 (AB0R65_12915) mreB 2658285..2659298 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  AB0R65_RS12920 (AB0R65_12920) radC 2659390..2660085 (-) 696 WP_007408165.1 DNA repair protein RadC -
  AB0R65_RS12925 (AB0R65_12925) - 2660117..2660686 (-) 570 WP_007408164.1 nucleoside triphosphate pyrophosphatase -
  AB0R65_RS12930 (AB0R65_12930) - 2660827..2661828 (-) 1002 WP_167340804.1 SPOR domain-containing protein -
  AB0R65_RS12935 (AB0R65_12935) comC 2661955..2662707 (-) 753 WP_167340805.1 A24 family peptidase Machinery gene
  AB0R65_RS12940 (AB0R65_12940) - 2662847..2664139 (-) 1293 WP_167340806.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AB0R65_RS12945 (AB0R65_12945) - 2664198..2666840 (-) 2643 WP_205164564.1 valine--tRNA ligase -
  AB0R65_RS12950 (AB0R65_12950) - 2667293..2667484 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27223.93 Da        Isoelectric Point: 9.4293

>NTDB_id=1020000 AB0R65_RS12935 WP_167340805.1 2661955..2662707(-) (comC) [Bacillus velezensis strain JJ1284]
MLLILFFLGLIFGSFFYTAACRIPLRISVISTRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1020000 AB0R65_RS12935 WP_167340805.1 2661955..2662707(-) (comC) [Bacillus velezensis strain JJ1284]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGACGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGTATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment