Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB0R89_RS10620 Genome accession   NZ_CP160218
Coordinates   2251689..2252297 (+) Length   202 a.a.
NCBI ID   WP_007409489.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP45     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2246689..2257297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R89_RS10580 (AB0R89_10580) - 2247742..2248248 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  AB0R89_RS10585 (AB0R89_10585) - 2248387..2248800 (+) 414 WP_043021750.1 Hsp20/alpha crystallin family protein -
  AB0R89_RS10590 (AB0R89_10590) - 2248830..2249264 (-) 435 WP_007409493.1 YppG family protein -
  AB0R89_RS10595 (AB0R89_10595) - 2249451..2249633 (+) 183 WP_003153532.1 YppF family protein -
  AB0R89_RS10600 (AB0R89_10600) - 2249672..2250040 (-) 369 WP_007409492.1 YppE family protein -
  AB0R89_RS10605 (AB0R89_10605) - 2250086..2250331 (-) 246 WP_012117836.1 DUF5446 family protein -
  AB0R89_RS10610 (AB0R89_10610) sspM 2250537..2250641 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  AB0R89_RS10615 (AB0R89_10615) - 2250685..2251647 (-) 963 WP_014305287.1 DUF2515 domain-containing protein -
  AB0R89_RS10620 (AB0R89_10620) recU 2251689..2252297 (+) 609 WP_007409489.1 Holliday junction resolvase RecU Machinery gene
  AB0R89_RS10625 (AB0R89_10625) - 2252336..2255119 (+) 2784 WP_043021749.1 PBP1A family penicillin-binding protein -
  AB0R89_RS10630 (AB0R89_10630) - 2255197..2255688 (-) 492 WP_043021748.1 YpoC family protein -
  AB0R89_RS10635 (AB0R89_10635) nth 2255685..2256344 (-) 660 WP_007612187.1 endonuclease III -
  AB0R89_RS10640 (AB0R89_10640) dnaD 2256363..2257061 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.81 Da        Isoelectric Point: 9.5778

>NTDB_id=1019541 AB0R89_RS10620 WP_007409489.1 2251689..2252297(+) (recU) [Bacillus velezensis strain AP45]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLVNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1019541 AB0R89_RS10620 WP_007409489.1 2251689..2252297(+) (recU) [Bacillus velezensis strain AP45]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGTTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment