Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   DQL23_RS01190 Genome accession   NZ_LS483341
Coordinates   251030..253384 (-) Length   784 a.a.
NCBI ID   WP_060553147.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7865     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 246030..258384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL23_RS01155 (NCTC7865_00229) dinB 246812..247876 (+) 1065 WP_060553152.1 DNA polymerase IV -
  DQL23_RS01165 (NCTC7865_00230) - 248088..248414 (+) 327 WP_060553151.1 hypothetical protein -
  DQL23_RS01175 (NCTC7865_00231) - 248732..249526 (+) 795 WP_060553150.1 CPBP family intramembrane glutamic endopeptidase -
  DQL23_RS01180 (NCTC7865_00232) - 249516..250265 (+) 750 WP_060553149.1 CPBP family intramembrane glutamic endopeptidase -
  DQL23_RS01185 (NCTC7865_00233) - 250341..250979 (+) 639 WP_060553148.1 TetR/AcrR family transcriptional regulator -
  DQL23_RS01190 (NCTC7865_00234) recD/recD2/recDB 251030..253384 (-) 2355 WP_060553147.1 ATP-dependent RecD-like DNA helicase Machinery gene
  DQL23_RS01195 (NCTC7865_00235) lepB 253479..254081 (-) 603 WP_048776365.1 signal peptidase I -
  DQL23_RS01200 (NCTC7865_00236) rnhC 254085..254975 (-) 891 WP_045505412.1 ribonuclease HIII -
  DQL23_RS01205 (NCTC7865_00237) - 255125..255430 (+) 306 WP_008808274.1 hypothetical protein -
  DQL23_RS01210 (NCTC7865_00238) - 255430..255978 (+) 549 WP_060553313.1 CvpA family protein -
  DQL23_RS01215 (NCTC7865_00239) mutS/mutS2 256034..258367 (+) 2334 WP_060553146.1 endonuclease MutS2 Machinery gene

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88094.30 Da        Isoelectric Point: 4.6291

>NTDB_id=1018728 DQL23_RS01190 WP_060553147.1 251030..253384(-) (recD/recD2/recDB) [Streptococcus gordonii strain NCTC7865]
MEFYFSGTVERIIFENPNNFFRILLLDIEDTDAEFDDFEIIVTGTMADIMEGQDYTFWGTLVQHPKYGEQLKVTRYERAK
PTSKGLVKYFASDHFKGIGVKTAQKIVDLYGDNTIDQILADPSRLVSINGLSAVNREAFVSKLRQNYGTEMLLSKLAEYG
IPNKLALQIQDTYKEETLEIVQKYPYQLVEDIQGIGFKIADQLAQQLGIESDAPERFRAGLVHTLFSQSMETGDTYIEAR
DLLSHTIDLLENARQVELDPALVADELAHLIEEDKIQNVETKIFENSLYFAEEGIRSNLIRILEKGKQETFDAPKLESII
EQVEQDLGICYDHIQKKAICDAINHKVFILTGGPGTGKTTVINGIIATYATLHKLDLAKKQELPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDDDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNSKILIVGDADQLPSVSPGQVLADL
LKIPILPQTKLTKIYRQGEDSTIVTLASQIQQGLLPADFTEKKADRSYFEATSEYIPDMIKKIVAAAIRSGIPAQNVQVL
APMYRGPAGIDQVNQLMQDLINPSEKDQLVFEAPDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEIVYQRSEWYKIRLAYAMSIHKSQGSEFPVVILPITKSSHRMLQRNLVYTAITRAKSKLILLGEFSAFQFAVKN
TGTARKTYLVERFADLEAPQEPIHTPMDRLEKAVGNYVLTEENFLKIDPLIGLTEEDIHSIFIT

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=1018728 DQL23_RS01190 WP_060553147.1 251030..253384(-) (recD/recD2/recDB) [Streptococcus gordonii strain NCTC7865]
ATGGAATTCTATTTTTCAGGAACCGTCGAACGCATTATATTTGAAAATCCCAACAATTTCTTTCGAATTTTGTTACTGGA
TATCGAGGACACAGATGCAGAATTTGATGATTTTGAGATTATCGTGACCGGAACCATGGCCGATATCATGGAAGGACAAG
ACTACACTTTTTGGGGAACTCTTGTCCAGCATCCCAAATACGGGGAACAGCTAAAAGTAACTCGCTACGAAAGAGCAAAG
CCAACTAGTAAGGGCCTGGTCAAGTATTTTGCTAGCGATCATTTTAAAGGGATCGGTGTTAAGACCGCCCAAAAGATAGT
AGACCTCTATGGTGATAATACGATTGACCAGATCTTAGCTGATCCTAGCCGGCTCGTAAGTATTAACGGCCTTTCTGCAG
TCAATCGGGAAGCCTTCGTCAGCAAACTGAGACAAAATTACGGCACAGAGATGTTGCTCTCTAAACTCGCTGAATATGGC
ATCCCCAATAAACTTGCCTTGCAGATTCAAGACACCTATAAAGAAGAAACGCTGGAAATTGTCCAAAAATATCCTTATCA
ACTAGTTGAGGACATTCAAGGTATTGGTTTCAAAATAGCTGACCAGTTGGCCCAGCAACTAGGTATTGAAAGCGACGCTC
CAGAGCGTTTCCGGGCTGGACTTGTTCATACCCTTTTCAGCCAGTCTATGGAGACAGGTGATACTTATATAGAAGCACGT
GACTTACTATCCCACACCATTGATTTGCTGGAGAATGCCCGTCAGGTTGAACTTGACCCTGCCTTGGTAGCGGATGAATT
GGCCCACCTCATTGAAGAAGATAAGATTCAAAACGTCGAAACAAAAATCTTTGAAAACAGTCTTTATTTCGCCGAGGAAG
GTATCCGTAGCAATCTGATTCGGATTCTAGAAAAAGGCAAACAAGAAACCTTTGATGCCCCAAAACTCGAAAGTATCATC
GAACAAGTCGAGCAAGATTTAGGAATCTGCTATGACCATATTCAAAAGAAGGCTATCTGCGATGCCATTAATCATAAGGT
GTTTATTCTGACGGGTGGGCCAGGAACTGGTAAAACAACTGTTATCAACGGCATCATTGCTACTTATGCTACTCTTCATA
AGCTAGATTTAGCTAAAAAACAGGAATTACCTATTCTGCTTGCTGCTCCGACTGGACGAGCTGCTAGACGAATGAATGAA
TTGACTGGGCTACCCAGTGCTACTATTCACCGGCATCTGGGGATGACTGGAGATGATGATACCAGTCATTTAGATGACTA
TTTGGATGCTGATTTCATCATTGTAGACGAGTTCTCTATGGTCGATACTTGGCTGGCCAATCAACTGCTCAGCAATATTT
CTTCCAACAGTAAGATCCTCATTGTGGGGGATGCTGACCAGCTTCCGTCTGTCAGTCCCGGTCAGGTTCTGGCCGATCTT
TTAAAAATACCTATCTTGCCTCAAACCAAGCTGACAAAAATCTACCGGCAAGGAGAAGATTCAACAATTGTTACCCTGGC
TAGTCAAATCCAGCAAGGACTGCTACCAGCTGATTTTACTGAAAAAAAGGCGGATCGTTCCTATTTTGAAGCAACTAGTG
AATATATCCCTGATATGATTAAAAAAATCGTAGCCGCTGCCATCCGCAGTGGCATCCCTGCCCAGAACGTCCAAGTCTTG
GCTCCTATGTACCGAGGACCCGCAGGAATCGACCAAGTCAACCAACTCATGCAGGATCTGATAAATCCATCAGAAAAAGA
CCAACTGGTCTTTGAAGCACCAGACTGCCAGTACCGGCAAGGAGACAAGGTCATCCACCTTGTCAATGATGCTGAAAGCA
ATGTGTTTAATGGGGACTTGGGCTATATCACGGACTTGTTGCCAGCAAAATACACCGACTCTAAGCAAGATGAACTTACC
ATCAACTTCGATGGAAATGAAATCGTCTACCAACGTAGCGAGTGGTACAAGATTCGCTTGGCTTATGCCATGAGTATTCA
TAAATCACAAGGTAGTGAATTTCCTGTCGTGATTCTGCCAATCACCAAGAGTAGCCACCGCATGCTCCAGCGCAATCTGG
TCTACACAGCCATTACCCGGGCCAAGAGCAAGCTCATTCTTTTAGGAGAATTTTCTGCCTTTCAATTTGCAGTAAAAAAC
ACGGGCACTGCCCGCAAAACCTATCTGGTCGAGCGTTTTGCTGACCTAGAAGCCCCACAGGAACCTATCCACACTCCTAT
GGATAGGTTGGAAAAAGCTGTGGGAAACTATGTCTTGACAGAAGAAAATTTCCTGAAAATCGACCCCCTAATCGGCCTGA
CCGAGGAAGATATCCACAGTATATTCATCACATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-643)

AAA domain (AAA_30)

(334-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.042

100

0.412