Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   DQL34_RS04640 Genome accession   NZ_LS483339
Coordinates   858734..859381 (-) Length   215 a.a.
NCBI ID   WP_014608171.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain NCTC12958     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 853734..864381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL34_RS04620 (NCTC12958_00963) holA 854064..855098 (+) 1035 WP_002946639.1 DNA polymerase III subunit delta -
  DQL34_RS04625 (NCTC12958_00964) sodA 855193..855798 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  DQL34_RS11650 - 855877..857126 (-) 1250 Protein_861 ISL3 family transposase -
  DQL34_RS04635 (NCTC12958_00967) - 857260..858693 (+) 1434 WP_111679540.1 serine hydrolase -
  DQL34_RS04640 (NCTC12958_00968) cclA/cilC 858734..859381 (-) 648 WP_014608171.1 prepilin peptidase Machinery gene
  DQL34_RS04645 (NCTC12958_00969) - 859490..860011 (+) 522 WP_011680999.1 Dps family protein -
  DQL34_RS04650 - 860064..860261 (-) 198 Protein_865 prepilin peptidase -
  DQL34_RS04655 (NCTC12958_00970) - 860370..860891 (+) 522 WP_111679541.1 Dps family protein -
  DQL34_RS04660 (NCTC12958_00971) - 860980..861417 (+) 438 WP_100262404.1 Fur family transcriptional regulator -
  DQL34_RS04665 (NCTC12958_00972) - 861527..861733 (+) 207 WP_022096801.1 YqgQ family protein -
  DQL34_RS04670 (NCTC12958_00973) - 861726..862694 (+) 969 WP_084825911.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24867.98 Da        Isoelectric Point: 8.5469

>NTDB_id=1018560 DQL34_RS04640 WP_014608171.1 858734..859381(-) (cclA/cilC) [Streptococcus thermophilus strain NCTC12958]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYNYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFISVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=1018560 DQL34_RS04640 WP_014608171.1 858734..859381(-) (cclA/cilC) [Streptococcus thermophilus strain NCTC12958]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTATCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATAACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATTAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

99.535

0.395
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

99.535

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae D39

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae R6

38.785

99.535

0.386