Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AB0962_RS01455 Genome accession   NZ_CP160130
Coordinates   307350..308090 (+) Length   246 a.a.
NCBI ID   WP_086379706.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB37-AUFP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302350..313090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0962_RS01440 (AB0962_01440) ponA 302937..305492 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  AB0962_RS01445 (AB0962_01445) pilM 305654..306712 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AB0962_RS01450 (AB0962_01450) pilN 306712..307353 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  AB0962_RS01455 (AB0962_01455) pilO 307350..308090 (+) 741 WP_086379706.1 type 4a pilus biogenesis protein PilO Machinery gene
  AB0962_RS01460 (AB0962_01460) pilP 308101..308628 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  AB0962_RS01465 (AB0962_01465) pilQ 308696..310861 (+) 2166 WP_029424115.1 type IV pilus secretin PilQ family protein Machinery gene
  AB0962_RS01470 (AB0962_01470) aroK 310873..311442 (+) 570 WP_000643712.1 shikimate kinase AroK -
  AB0962_RS01475 (AB0962_01475) aroB 311471..312553 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27818.64 Da        Isoelectric Point: 5.1365

>NTDB_id=1018223 AB0962_RS01455 WP_086379706.1 307350..308090(+) (pilO) [Acinetobacter baumannii strain AB37-AUFP]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQK
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1018223 AB0962_RS01455 WP_086379706.1 307350..308090(+) (pilO) [Acinetobacter baumannii strain AB37-AUFP]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGAAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679

Multiple sequence alignment