Detailed information NTG1017639

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABX024_RS04855
• Genome accession: NZ_CP160074
• Coordinates: 1097526..1099010 (-)
• Length: 494 a.a.
• NCBI ID: WP_370579935.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Amel08
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1092526..1104010

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABX024_RS04840 (ABX024_02390)	amgK	1094643..1095647 (+)	1005	WP_084565505.1	N-acetylmuramate/N-acetylglucosamine kinase AmgK	-
ABX024_RS04845 (ABX024_16040)	-	1095718..1096695 (-)	978	WP_370579933.1	hypothetical protein	-
ABX024_RS04850 (ABX024_02370)	-	1096765..1097526 (-)	762	WP_370579934.1	class I SAM-dependent methyltransferase	-
ABX024_RS04855 (ABX024_02365)	pilR	1097526..1099010 (-)	1485	WP_370579935.1	sigma-54-dependent transcriptional regulator	Regulator
ABX024_RS04860 (ABX024_16045)	-	1099003..1100577 (-)	1575	WP_370579936.1	nitrogen regulation protein NR(II)	-
ABX024_RS04865 (ABX024_02335)	parC	1100584..1102902 (-)	2319	WP_370579937.1	DNA topoisomerase IV subunit A	-

Sequence

Protein

• Length: 494 a.a.
• Molecular weight: 55557.29 Da
• Isoelectric Point: 5.1233

>NTDB_id=1017639 ABX024_RS04855 WP_370579935.1 1097526..1099010(-) (pilR) [Snodgrassella alvi strain Amel08]
MNNNNQMDLEKPVLIIDDEADIRDLMELTLIKMGLSVKTVAGVAEAKKALRTHAFSLVLTDMRMPDGSGLEIVDYITAHN
LDIPIAVITAYGNAAQAVQALKNGAFDYLQKPITLAQLRTLVKSVITINNTAETEIDNKMVTAFKQSENKQKNEDTSATV
NEQQVRERLLGNSPLITEVRQLISKLAKSNVPVYIAGESGSGKEQAARSIHEQSERRDKAFVAVNCGAIPEALMESEFFG
YKKGSFTGADTDRAGFFQHADGGTLFLDEVADLPLSMQVKLLRAIQERAVRRIGEMEEKQVDVRIICATHKDLNALVESG
QFRQDLFYRLNVVSITMPPLRELRDDLPQLIRVLLQRILHDETMTLTPEAKKALLQYSYPGNFRELENILERAIALSKNH
IIEVDDLQIHSYQLDNPRTESAENAGSNLSADSNEEIEDYQFGKTQIQDYLDEIERKILEQALAQTRYNRTQAAKLLGIS
FRSMRYRMERLGIV

Nucleotide

• Length: 1485 bp

>NTDB_id=1017639 ABX024_RS04855 WP_370579935.1 1097526..1099010(-) (pilR) [Snodgrassella alvi strain Amel08]
ATGAATAATAATAATCAGATGGACTTAGAAAAGCCGGTACTGATAATAGATGATGAAGCCGATATTCGTGATTTAATGGA
GTTAACCCTGATTAAAATGGGTTTGTCCGTAAAAACTGTCGCTGGTGTAGCTGAGGCAAAAAAGGCTTTACGTACGCATG
CTTTCTCTCTGGTGCTAACGGATATGCGTATGCCGGATGGCTCCGGGCTGGAGATTGTTGATTATATCACTGCTCATAAT
CTGGATATTCCGATTGCAGTTATTACCGCTTACGGAAATGCAGCGCAGGCTGTACAGGCACTGAAAAATGGTGCTTTCGA
TTACTTACAAAAACCTATTACACTGGCGCAGCTGCGTACTCTGGTTAAATCTGTTATTACAATCAATAATACTGCCGAAA
CCGAAATAGATAATAAAATGGTAACCGCATTTAAACAGTCTGAAAATAAACAAAAAAATGAAGATACTTCCGCAACGGTT
AATGAACAGCAGGTACGTGAACGTTTACTGGGTAACTCTCCGTTAATAACTGAAGTACGTCAGTTGATCAGCAAGCTGGC
TAAAAGTAACGTGCCGGTATACATCGCTGGAGAATCAGGCAGTGGTAAAGAGCAGGCAGCACGCAGTATTCATGAACAGT
CAGAACGCAGAGACAAGGCATTTGTCGCTGTAAATTGTGGTGCCATACCTGAAGCATTGATGGAAAGTGAGTTTTTTGGT
TATAAAAAAGGCAGTTTTACCGGAGCCGATACAGATAGAGCAGGTTTCTTTCAACATGCGGACGGCGGTACATTATTTCT
GGATGAGGTAGCTGATTTACCACTATCGATGCAGGTTAAATTATTGCGCGCCATTCAGGAACGTGCTGTACGCCGGATTG
GCGAAATGGAAGAAAAGCAGGTTGATGTCCGTATTATCTGTGCAACCCATAAAGATTTAAATGCTCTGGTTGAATCAGGT
CAGTTTCGTCAGGACTTGTTTTATCGTTTGAATGTTGTATCTATTACCATGCCGCCATTACGTGAATTACGTGATGATTT
GCCACAGTTAATTCGGGTTTTACTGCAACGAATTTTGCATGATGAAACTATGACATTAACACCGGAAGCAAAAAAAGCAC
TGTTGCAATACAGTTATCCAGGTAATTTCCGTGAATTGGAGAATATTCTGGAACGTGCTATCGCACTGTCGAAAAATCAT
ATTATTGAGGTAGATGATTTACAGATTCATAGCTATCAGCTGGATAATCCGCGTACTGAATCTGCAGAGAATGCCGGCAG
TAATCTATCCGCAGATAGTAATGAGGAAATTGAGGATTACCAGTTCGGAAAAACTCAGATACAGGATTATCTGGATGAAA
TAGAGAGAAAAATCCTGGAACAGGCTTTAGCGCAAACCCGATATAACCGAACACAGGCCGCCAAATTACTGGGTATCAGT
TTTCGTTCTATGCGTTACCGGATGGAACGGTTAGGGATTGTCTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (170-335)

• Response regulator receiver domain (Response_reg) (13-122)

• Bacterial regulatory protein, Fis family (HTH_8) (451-490)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	50.823	98.381	0.5
pilR	Acinetobacter baumannii strain A118	42.094	98.583	0.415