Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABX022_RS07245 Genome accession   NZ_CP160072
Coordinates   1608708..1609178 (-) Length   156 a.a.
NCBI ID   WP_041880343.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Amel07     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603708..1614178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABX022_RS07225 (ABX022_13395) lpdA 1604029..1605780 (+) 1752 WP_370580130.1 dihydrolipoyl dehydrogenase -
  ABX022_RS07230 (ABX022_13390) - 1606054..1607181 (+) 1128 WP_084549997.1 AI-2E family transporter -
  ABX022_RS07235 (ABX022_13385) rpsT 1607303..1607569 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABX022_RS07240 (ABX022_13380) - 1607602..1608555 (+) 954 WP_100125301.1 bile acid:sodium symporter family protein -
  ABX022_RS07245 (ABX022_13370) recX 1608708..1609178 (-) 471 WP_041880343.1 recombination regulator RecX Regulator
  ABX022_RS07250 (ABX022_13365) - 1609175..1609882 (-) 708 WP_100125302.1 phosphoglycolate phosphatase -
  ABX022_RS07255 (ABX022_15990) - 1610041..1611111 (-) 1071 WP_174829990.1 aldose epimerase family protein -
  ABX022_RS07260 (ABX022_13345) - 1611098..1612411 (-) 1314 WP_370580131.1 replication-associated recombination protein A -
  ABX022_RS07265 (ABX022_13340) - 1612580..1612927 (+) 348 WP_370580132.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18256.66 Da        Isoelectric Point: 9.1774

>NTDB_id=1017595 ABX022_RS07245 WP_041880343.1 1608708..1609178(-) (recX) [Snodgrassella alvi strain Amel07]
MKQKISLRARAITLLARREISRAELARKLHPYADENDNLEALLDELAQKHWQSDERYTETYINSKSRLHGNLRLEQSLKQ
KGVDAALIADYLPDREQQTNNAIAVLQKKYRQPPADLKEKHKRMHFLAYRGFSMDIIHSAIRQAWADTSLPDEDEY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1017595 ABX022_RS07245 WP_041880343.1 1608708..1609178(-) (recX) [Snodgrassella alvi strain Amel07]
ATGAAGCAAAAAATCAGTTTACGTGCCCGTGCCATTACCCTACTGGCACGGCGGGAAATCAGCAGAGCTGAGCTGGCACG
TAAGCTGCATCCTTATGCAGATGAAAACGACAATCTTGAAGCATTACTGGATGAACTGGCACAAAAGCACTGGCAGTCAG
ATGAGCGATATACGGAAACTTATATCAATAGTAAAAGCCGGCTGCATGGTAATCTGCGTTTAGAGCAAAGCCTGAAGCAA
AAAGGTGTGGATGCAGCTCTGATTGCAGATTATTTACCGGACAGAGAACAACAGACAAATAATGCTATAGCTGTTTTGCA
AAAAAAATATCGCCAGCCTCCCGCTGACTTAAAAGAAAAACATAAACGTATGCATTTTCTTGCTTATCGCGGTTTTAGTA
TGGATATTATTCACTCAGCTATCCGCCAGGCGTGGGCTGATACTTCGCTGCCAGACGAAGATGAATACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(35-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.414

92.949

0.487

Multiple sequence alignment