Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ABWI26_RS06295 Genome accession   NZ_CP159983
Coordinates   1250295..1250585 (+) Length   96 a.a.
NCBI ID   WP_119326562.1    Uniprot ID   -
Organism   Companilactobacillus musae strain zy 130     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1245295..1255585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWI26_RS06280 - 1247537..1248271 (+) 735 WP_119326565.1 YebC/PmpR family DNA-binding transcriptional regulator -
  ABWI26_RS06285 comGA 1248348..1249316 (+) 969 WP_119326564.1 competence type IV pilus ATPase ComGA -
  ABWI26_RS06290 - 1249309..1250295 (+) 987 WP_246001299.1 type II secretion system F family protein -
  ABWI26_RS06295 comGC 1250295..1250585 (+) 291 WP_119326562.1 competence type IV pilus major pilin ComGC Machinery gene
  ABWI26_RS06300 - 1250575..1251012 (+) 438 WP_119326561.1 type II secretion system protein -
  ABWI26_RS06305 - 1250996..1251277 (+) 282 WP_119326560.1 hypothetical protein -
  ABWI26_RS06310 - 1251330..1251704 (+) 375 WP_162894213.1 competence type IV pilus minor pilin ComGF -
  ABWI26_RS06315 - 1251970..1252983 (+) 1014 WP_119326557.1 class I SAM-dependent methyltransferase -
  ABWI26_RS06320 - 1252994..1254190 (+) 1197 WP_119326556.1 acetate kinase -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 11123.93 Da        Isoelectric Point: 6.3927

>NTDB_id=1016987 ABWI26_RS06295 WP_119326562.1 1250295..1250585(+) (comGC) [Companilactobacillus musae strain zy 130]
MKKTRKAFTLIEMVIVLFIISLLLLIMIPNLADQRNKATKKSDEAFVTTIKTQEEMYENDNGAKKPTLDELKNEGYITEN
QLKKAKDFKEELTNEN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1016987 ABWI26_RS06295 WP_119326562.1 1250295..1250585(+) (comGC) [Companilactobacillus musae strain zy 130]
ATGAAAAAAACTAGAAAAGCTTTTACCTTAATTGAAATGGTGATTGTATTATTTATTATTTCACTGTTGTTATTGATCAT
GATTCCCAATTTAGCCGATCAAAGAAATAAAGCTACTAAAAAGTCTGACGAGGCTTTTGTGACAACTATCAAAACGCAAG
AAGAGATGTATGAAAATGATAATGGTGCCAAGAAACCAACCTTAGATGAATTAAAAAATGAAGGTTATATAACCGAAAAT
CAATTGAAAAAGGCTAAAGATTTTAAAGAAGAATTAACTAATGAAAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

54.023

90.625

0.49
  comGC Lactococcus lactis subsp. cremoris KW2

41.053

98.958

0.406
  comYC Streptococcus suis isolate S10

46.835

82.292

0.385
  comYC Streptococcus mutans UA140

43.373

86.458

0.375
  comYC Streptococcus mutans UA159

43.373

86.458

0.375
  comGC/cglC Streptococcus mitis NCTC 12261

42.169

86.458

0.365
  comYC Streptococcus gordonii str. Challis substr. CH1

39.326

92.708

0.365

Multiple sequence alignment