Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | ABYM97_RS16575 | Genome accession | NZ_CP159874 |
| Coordinates | 3207764..3208174 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain PY79 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3203130..3254620 | 3207764..3208174 | within | 0 |
Gene organization within MGE regions
Location: 3203130..3254620
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABYM97_RS16550 (ABYM97_16550) | yqeF | 3203297..3204028 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| ABYM97_RS16555 (ABYM97_16555) | cwlH | 3204280..3205032 (-) | 753 | WP_003229963.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| ABYM97_RS16560 (ABYM97_16560) | yqeD | 3205219..3205845 (+) | 627 | WP_003229962.1 | TVP38/TMEM64 family protein | - |
| ABYM97_RS16565 (ABYM97_16565) | gnd | 3205864..3206757 (-) | 894 | WP_003229961.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| ABYM97_RS16570 (ABYM97_16570) | yqeB | 3207009..3207731 (+) | 723 | WP_010886572.1 | hypothetical protein | - |
| ABYM97_RS16575 (ABYM97_16575) | nucA/comI | 3207764..3208174 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| ABYM97_RS16580 (ABYM97_16580) | - | 3208370..3208717 (+) | 348 | Protein_3245 | sigma-70 family RNA polymerase sigma factor | - |
| ABYM97_RS16585 (ABYM97_16585) | spoIVCA | 3208748..3210208 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| ABYM97_RS16590 (ABYM97_16590) | - | 3210166..3210344 (-) | 179 | Protein_3247 | hypothetical protein | - |
| ABYM97_RS16595 (ABYM97_16595) | arsC | 3210699..3211118 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| ABYM97_RS16600 (ABYM97_16600) | acr3 | 3211130..3212170 (-) | 1041 | WP_004398718.1 | arsenite efflux transporter Acr3 | - |
| ABYM97_RS16605 (ABYM97_16605) | arsK | 3212193..3212633 (-) | 441 | WP_003229954.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| ABYM97_RS16610 (ABYM97_16610) | arsR | 3212694..3213011 (-) | 318 | WP_004399122.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| ABYM97_RS16615 (ABYM97_16615) | yqcI | 3213383..3214147 (-) | 765 | WP_004398670.1 | YqcI/YcgG family protein | - |
| ABYM97_RS16620 (ABYM97_16620) | rapE | 3214590..3215717 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| ABYM97_RS16625 (ABYM97_16625) | phrE | 3215707..3215841 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| ABYM97_RS16630 (ABYM97_16630) | - | 3215951..3216109 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| ABYM97_RS16635 (ABYM97_16635) | yqcG | 3216479..3218074 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| ABYM97_RS16640 (ABYM97_16640) | yqcF | 3218089..3218667 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| ABYM97_RS16645 (ABYM97_16645) | - | 3218785..3218931 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| ABYM97_RS16650 (ABYM97_16650) | - | 3218928..3219290 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| ABYM97_RS16655 (ABYM97_16655) | - | 3219306..3219785 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| ABYM97_RS16660 (ABYM97_16660) | cwlA | 3219950..3220768 (-) | 819 | WP_003229946.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| ABYM97_RS16665 (ABYM97_16665) | skhD | 3220813..3221235 (-) | 423 | WP_003246208.1 | holin family protein | - |
| ABYM97_RS16670 (ABYM97_16670) | xepAK | 3221280..3222173 (-) | 894 | WP_003246010.1 | hypothetical protein | - |
| ABYM97_RS16675 (ABYM97_16675) | yqcE | 3222261..3222425 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| ABYM97_RS16680 (ABYM97_16680) | yqcD | 3222422..3222757 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| ABYM97_RS16685 (ABYM97_16685) | yqcC | 3222767..3223867 (-) | 1101 | WP_003229943.1 | pyocin knob domain-containing protein | - |
| ABYM97_RS16690 (ABYM97_16690) | - | 3223870..3224142 (-) | 273 | WP_003229942.1 | hypothetical protein | - |
| ABYM97_RS16695 (ABYM97_16695) | yqcA | 3224139..3224717 (-) | 579 | WP_003229941.1 | YmfQ family protein | - |
| ABYM97_RS16700 (ABYM97_16700) | yqbT | 3224701..3225747 (-) | 1047 | WP_003229940.1 | baseplate J/gp47 family protein | - |
| ABYM97_RS16705 (ABYM97_16705) | yqbS | 3225740..3226165 (-) | 426 | WP_004398572.1 | DUF2634 domain-containing protein | - |
| ABYM97_RS16710 (ABYM97_16710) | yqbR | 3226178..3226441 (-) | 264 | WP_003229938.1 | DUF2577 family protein | - |
| ABYM97_RS16715 (ABYM97_16715) | yqbQ | 3226438..3227418 (-) | 981 | WP_004398524.1 | hypothetical protein | - |
| ABYM97_RS16720 (ABYM97_16720) | yqbP | 3227431..3228090 (-) | 660 | WP_004398548.1 | LysM peptidoglycan-binding domain-containing protein | - |
| ABYM97_RS16725 (ABYM97_16725) | yqbO | 3228083..3232840 (-) | 4758 | WP_003246092.1 | phage tail tape measure protein | - |
| ABYM97_RS16730 (ABYM97_16730) | - | 3232843..3232980 (-) | 138 | WP_003229934.1 | hypothetical protein | - |
| ABYM97_RS16735 (ABYM97_16735) | - | 3233022..3233471 (-) | 450 | WP_003229933.1 | phage portal protein | - |
| ABYM97_RS16740 (ABYM97_16740) | txpA | 3233617..3233796 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| ABYM97_RS16745 (ABYM97_16745) | bsrH | 3234176..3234265 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| ABYM97_RS16750 (ABYM97_16750) | yqbM | 3234519..3234962 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| ABYM97_RS16755 (ABYM97_16755) | yqbK | 3234965..3236365 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| ABYM97_RS16760 (ABYM97_16760) | - | 3236366..3236557 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| ABYM97_RS16765 (ABYM97_16765) | yqbJ | 3236554..3236991 (-) | 438 | WP_003229927.1 | DUF6838 family protein | - |
| ABYM97_RS16770 (ABYM97_16770) | yqbI | 3237004..3237507 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| ABYM97_RS16775 (ABYM97_16775) | yqbH | 3237504..3237866 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| ABYM97_RS16780 (ABYM97_16780) | gkpG | 3237863..3238258 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| ABYM97_RS16785 (ABYM97_16785) | yqbF | 3238262..3238573 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| ABYM97_RS16790 (ABYM97_16790) | skdG | 3238584..3239519 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| ABYM97_RS16795 (ABYM97_16795) | yqbD | 3239538..3240506 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| ABYM97_RS16800 (ABYM97_16800) | - | 3240539..3241192 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| ABYM97_RS16805 (ABYM97_16805) | yqbB | 3241233..3242150 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| ABYM97_RS16810 (ABYM97_16810) | yqbA | 3242147..3243679 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| ABYM97_RS16815 (ABYM97_16815) | stmB | 3243683..3244978 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| ABYM97_RS16820 (ABYM97_16820) | terS | 3244971..3245690 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| ABYM97_RS16825 (ABYM97_16825) | - | 3245758..3246222 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| ABYM97_RS16830 (ABYM97_16830) | yqaQ | 3246366..3246821 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| ABYM97_RS16835 (ABYM97_16835) | - | 3247019..3247948 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| ABYM97_RS16840 (ABYM97_16840) | yqaO | 3248022..3248228 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| ABYM97_RS16845 (ABYM97_16845) | yqaN | 3248310..3248738 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ABYM97_RS16850 (ABYM97_16850) | - | 3248834..3248983 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| ABYM97_RS16855 (ABYM97_16855) | sknM | 3248974..3249915 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| ABYM97_RS16860 (ABYM97_16860) | yqaL | 3249797..3250474 (-) | 678 | WP_010886575.1 | DnaD domain protein | - |
| ABYM97_RS16865 (ABYM97_16865) | recT | 3250550..3251404 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| ABYM97_RS16870 (ABYM97_16870) | yqaJ | 3251407..3252366 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| ABYM97_RS16875 (ABYM97_16875) | - | 3252472..3252666 (-) | 195 | WP_003229905.1 | hypothetical protein | - |
| ABYM97_RS16880 (ABYM97_16880) | - | 3252626..3252799 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| ABYM97_RS16885 (ABYM97_16885) | sknH | 3252796..3253053 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| ABYM97_RS16890 (ABYM97_16890) | yqaG | 3253050..3253619 (-) | 570 | WP_004398626.1 | helix-turn-helix transcriptional regulator | - |
| ABYM97_RS16895 (ABYM97_16895) | - | 3253693..3253833 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| ABYM97_RS16900 (ABYM97_16900) | yqaF | 3253863..3254093 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| ABYM97_RS16905 (ABYM97_16905) | sknR | 3254270..3254620 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=1016397 ABYM97_RS16575 WP_009967785.1 3207764..3208174(-) (nucA/comI) [Bacillus subtilis strain PY79]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=1016397 ABYM97_RS16575 WP_009967785.1 3207764..3208174(-) (nucA/comI) [Bacillus subtilis strain PY79]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |