Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   APECO2_RS03420 Genome accession   NZ_CP006834
Coordinates   656742..657218 (-) Length   158 a.a.
NCBI ID   WP_001186756.1    Uniprot ID   A0A0H2VD88
Organism   Escherichia coli APEC O2-211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 651742..662218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO2_RS28890 - 651798..651957 (-) 160 Protein_603 integrase -
  APECO2_RS03385 (APECO2_24735) - 652342..653877 (-) 1536 WP_000492897.1 EAL domain-containing protein -
  APECO2_RS03390 (APECO2_24740) - 653948..654793 (-) 846 WP_001280513.1 DUF4942 domain-containing protein -
  APECO2_RS03395 (APECO2_24745) - 654878..655075 (-) 198 WP_000839254.1 DUF957 domain-containing protein -
  APECO2_RS03400 (APECO2_24750) - 655087..655575 (-) 489 WP_000761714.1 DUF5983 family protein -
  APECO2_RS03405 (APECO2_24755) - 655572..655949 (-) 378 WP_001094436.1 TA system toxin CbtA family protein -
  APECO2_RS03410 (APECO2_24760) cbeA 655996..656373 (-) 378 WP_015953067.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  APECO2_RS03415 (APECO2_24765) - 656452..656673 (-) 222 WP_000692312.1 DUF987 domain-containing protein -
  APECO2_RS03420 (APECO2_24770) radC 656742..657218 (-) 477 WP_001186756.1 JAB domain-containing protein Machinery gene
  APECO2_RS03430 (APECO2_24775) - 657233..657718 (-) 486 WP_000860054.1 antirestriction protein -
  APECO2_RS03435 (APECO2_24780) - 657809..658627 (-) 819 WP_001175142.1 DUF932 domain-containing protein -
  APECO2_RS03440 (APECO2_25190) - 658717..658950 (-) 234 WP_001278287.1 DUF905 family protein -
  APECO2_RS03445 (APECO2_24785) - 658956..659633 (-) 678 WP_001097312.1 hypothetical protein -
  APECO2_RS03450 (APECO2_25195) - 659781..660461 (-) 681 WP_001282927.1 helix-turn-helix transcriptional regulator -
  APECO2_RS03455 (APECO2_24800) - 660664..661548 (-) 885 WP_000010416.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.31 Da        Isoelectric Point: 7.6149

>NTDB_id=101562 APECO2_RS03420 WP_001186756.1 656742..657218(-) (radC) [Escherichia coli APEC O2-211]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=101562 APECO2_RS03420 WP_001186756.1 656742..657218(-) (radC) [Escherichia coli APEC O2-211]
ATGCAACAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VD88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment