Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABUH86_RS08945 Genome accession   NZ_CP158669
Coordinates   1822391..1822825 (+) Length   144 a.a.
NCBI ID   WP_015417516.1    Uniprot ID   -
Organism   Bacillus velezensis strain XY40-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1817391..1827825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUH86_RS08940 (ABUH86_08940) - 1820891..1822102 (-) 1212 WP_353407940.1 cytochrome P450 -
  ABUH86_RS08945 (ABUH86_08945) nucA/comI 1822391..1822825 (+) 435 WP_015417516.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ABUH86_RS08950 (ABUH86_08950) - 1822886..1823641 (+) 756 WP_003154084.1 YoaK family protein -
  ABUH86_RS08955 (ABUH86_08955) - 1823675..1824037 (-) 363 WP_007410383.1 hypothetical protein -
  ABUH86_RS08960 (ABUH86_08960) - 1824230..1825558 (-) 1329 WP_353407945.1 S8 family peptidase -
  ABUH86_RS08965 (ABUH86_08965) - 1825737..1825972 (+) 236 Protein_1712 hypothetical protein -
  ABUH86_RS08970 (ABUH86_08970) - 1826228..1826935 (+) 708 WP_353407947.1 poly-gamma-glutamate hydrolase family protein -
  ABUH86_RS08975 (ABUH86_08975) - 1826995..1827447 (+) 453 WP_007410380.1 OsmC family protein -
  ABUH86_RS08980 (ABUH86_08980) - 1827461..1827814 (-) 354 WP_007410379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15514.44 Da        Isoelectric Point: 7.2418

>NTDB_id=1011920 ABUH86_RS08945 WP_015417516.1 1822391..1822825(+) (nucA/comI) [Bacillus velezensis strain XY40-1]
MNAFMKWAASLLLVISLQFGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADVRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=1011920 ABUH86_RS08945 WP_015417516.1 1822391..1822825(+) (nucA/comI) [Bacillus velezensis strain XY40-1]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGTTCGGCCTTACGGGCGCCGGTATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATGTCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATATT
CCGACGGCACGAGAGTATTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.258

86.111

0.493

Multiple sequence alignment