Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPOKI102_RS05130 Genome accession   NZ_CP006820
Coordinates   1090213..1090479 (-) Length   88 a.a.
NCBI ID   WP_017284177.1    Uniprot ID   -
Organism   Helicobacter pylori oki102     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1085213..1095479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI102_RS08705 - 1085285..1085650 (-) 366 WP_240444701.1 hypothetical protein -
  HPOKI102_RS05120 (HPOKI102_05320) - 1085767..1087800 (-) 2034 WP_025276168.1 type IA DNA topoisomerase -
  HPOKI102_RS08640 (HPOKI102_05325) - 1087803..1090166 (-) 2364 Protein_1004 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPOKI102_RS05130 (HPOKI102_05330) comB3 1090213..1090479 (-) 267 WP_017284177.1 hypothetical protein Machinery gene
  HPOKI102_RS05135 (HPOKI102_05335) - 1090480..1090782 (-) 303 WP_025276170.1 hypothetical protein -
  HPOKI102_RS05140 (HPOKI102_05340) - 1090779..1092302 (-) 1524 WP_025276171.1 hypothetical protein -
  HPOKI102_RS05145 (HPOKI102_05345) - 1092309..1092602 (-) 294 WP_025276172.1 hypothetical protein -
  HPOKI102_RS05150 (HPOKI102_05350) - 1092622..1093401 (-) 780 WP_025276173.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10144.95 Da        Isoelectric Point: 4.8782

>NTDB_id=101164 HPOKI102_RS05130 WP_017284177.1 1090213..1090479(-) (comB3) [Helicobacter pylori oki102]
MALHIVCVESINIREISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAIGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=101164 HPOKI102_RS05130 WP_017284177.1 1090213..1090479(-) (comB3) [Helicobacter pylori oki102]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGAAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTGTCATTCCAACCACTTTATGCTATAGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTACATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACCTTAAGA
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

42.169

94.318

0.398

Multiple sequence alignment