Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrM   Type   Regulator
Locus tag   H1W90_RS06360 Genome accession   NZ_LR822033
Coordinates   1225677..1226342 (-) Length   221 a.a.
NCBI ID   WP_164178181.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_1048     
Function   repress competence development; negative regulate HdrR activity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1220677..1231342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1W90_RS06330 (STHERMO_1411) - 1222026..1222901 (-) 876 WP_180481039.1 helix-turn-helix domain-containing protein -
  H1W90_RS06335 (STHERMO_1412) - 1223030..1223434 (-) 405 WP_070655990.1 NUDIX hydrolase -
  H1W90_RS06340 (STHERMO_1413) - 1223434..1223718 (-) 285 WP_011681341.1 hypothetical protein -
  H1W90_RS06345 (STHERMO_1414) - 1223858..1224517 (-) 660 WP_011681342.1 DUF6572 domain-containing protein -
  H1W90_RS06350 (STHERMO_1415) - 1224592..1224792 (-) 201 Protein_1218 ATP-binding cassette domain-containing protein -
  H1W90_RS06355 (STHERMO_1416) - 1224863..1225540 (-) 678 WP_164178180.1 hypothetical protein -
  H1W90_RS06360 (STHERMO_1417) hdrM 1225677..1226342 (-) 666 WP_164178181.1 hypothetical protein Regulator
  H1W90_RS06365 (STHERMO_1418) - 1226355..1226849 (-) 495 WP_014621752.1 YkgJ family cysteine cluster protein -
  H1W90_RS06370 (STHERMO_1419) - 1226934..1228934 (-) 2001 WP_180481040.1 ABC transporter permease -
  H1W90_RS06375 (STHERMO_1420) - 1228936..1229694 (-) 759 WP_014608483.1 ABC transporter ATP-binding protein -
  H1W90_RS06380 (STHERMO_1421) - 1229839..1230813 (-) 975 WP_011227354.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25115.19 Da        Isoelectric Point: 9.7598

>NTDB_id=1010941 H1W90_RS06360 WP_164178181.1 1225677..1226342(-) (hdrM) [Streptococcus thermophilus isolate STH_CIRM_1048]
MKRFNSGVITLLIIAAYFIATAFIPDLYLAFNYKLILALLFVLLSWQSKGKFLFFLGMAFLSTYIHDLFRLDYSEWTLFV
GILILGIAVDRLSKPSYKKKFSYKVSKEHEREIFAKTLFSESVQVVTSQNLETVYANADFGRLTLDLRQAQFMTDRPQIV
VQANFSQVIIRVPKDWQVDTHGLHTSLSGVKGYDSLGERELSSTTVSLTGSVSFGQVTIKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1010941 H1W90_RS06360 WP_164178181.1 1225677..1226342(-) (hdrM) [Streptococcus thermophilus isolate STH_CIRM_1048]
ATGAAACGCTTTAATTCAGGTGTTATTACCTTACTTATCATTGCAGCCTATTTTATCGCAACAGCTTTTATTCCAGATTT
GTATTTGGCTTTTAATTATAAGTTGATTTTAGCCTTGCTTTTTGTGCTTTTGAGCTGGCAATCTAAGGGAAAATTTCTCT
TTTTCTTGGGGATGGCCTTTCTATCAACCTACATACATGACCTTTTTCGCTTGGACTATTCGGAATGGACTCTCTTTGTA
GGGATTCTTATCTTGGGGATTGCAGTGGACCGTTTGAGCAAGCCAAGTTATAAGAAAAAATTCTCTTACAAGGTGTCTAA
AGAACATGAGCGAGAAATTTTTGCTAAGACTCTTTTTTCAGAGTCTGTGCAAGTGGTGACTTCTCAGAATCTTGAAACTG
TCTATGCCAATGCTGATTTTGGGCGTTTGACCTTGGATTTGCGTCAGGCTCAGTTTATGACGGACCGACCTCAGATTGTG
GTTCAGGCAAATTTTTCTCAGGTTATCATTCGAGTGCCCAAGGATTGGCAAGTGGATACACACGGGCTTCATACAAGCCT
ATCAGGAGTGAAAGGTTATGATAGTCTAGGAGAGCGAGAGTTATCAAGCACTACAGTTTCTCTAACAGGATCTGTATCCT
TTGGACAAGTAACTATCAAACATTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrM Streptococcus mutans UA159

37.963

97.738

0.371