Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABE953_RS01810 Genome accession   NZ_CP158282
Coordinates   425011..426828 (+) Length   605 a.a.
NCBI ID   WP_410504749.1    Uniprot ID   -
Organism   Ligilactobacillus salivarius strain LZZAY01     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 420011..431828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABE953_RS01795 (ABE953_01790) - 421454..423100 (+) 1647 WP_410504748.1 phosphoenolpyruvate carboxykinase (ATP) -
  ABE953_RS01800 (ABE953_01795) - 423204..423965 (+) 762 WP_101898228.1 adaptor protein MecA -
  ABE953_RS01805 (ABE953_01800) - 424014..424913 (+) 900 WP_161023073.1 competence protein CoiA -
  ABE953_RS01810 (ABE953_01805) pepF 425011..426828 (+) 1818 WP_410504749.1 oligoendopeptidase F Regulator
  ABE953_RS01815 (ABE953_01810) - 426918..427514 (-) 597 WP_162853479.1 ClpXP adapter SpxH family protein -
  ABE953_RS01820 (ABE953_01815) - 427693..428550 (+) 858 WP_160945075.1 phosphate ABC transporter substrate-binding protein -
  ABE953_RS01825 (ABE953_01820) pstC 428561..429478 (+) 918 WP_087448883.1 phosphate ABC transporter permease subunit PstC -
  ABE953_RS01830 (ABE953_01825) pstA 429478..430368 (+) 891 WP_003708300.1 phosphate ABC transporter permease PstA -
  ABE953_RS01835 (ABE953_01830) pstB 430373..431167 (+) 795 WP_410504750.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 70528.70 Da        Isoelectric Point: 5.4467

>NTDB_id=1010370 ABE953_RS01810 WP_410504749.1 425011..426828(+) (pepF) [Ligilactobacillus salivarius strain LZZAY01]
MSEKKAKRLLQRNEVPEELTWDLTKVFKSDEEFEKEYQAVKDEVQNFRKLQGTTDQGSQRFLQIIENFLSINRKFEKVYV
YASMKNDQDTTNAKYQGYNEMVDALAAEFSESISWFEPELLELDEDKLKQYFVEKKELKQYEHLIESMLVMRKHTLDKKS
ESLLAGASDIFGTSQNVFGILNNADLKFPIVKDDNGDDIQLSHGVYGKLIESTNREVRKAAFKGLYSVYDQFKHTMATTL
IGNVKVHNFKARVRNYKDAREAATTSNHIPIEVYDVLLEQVHKNLPLLHRYVKLRKKILGVDELHMYDMYTPLTEDSKLT
YNYIQAQIEAKKALEVLGMDYLTHVSEAFENRWIDVVENKGKRSGAYSSGVYDTPPYILLNWQDNLENLFTLVHEMGHSM
HSYYTSHNQPYQYGDYPIFLAEIASTTNENILMDYLLKNNDEKEILIYILNHYLDGFKGTVYRQTQFAEFEKWIHEQNSK
GVPLTAKSISEYYLELNKKYYGSDVISDPEIALEWARIPHFYYNFYVYQYATGFAAATTLAENILSGDENKLNKYLTYLK
AGSSKYPLEVMKDAGVDMTNSSYLEKAFKVFEERLNQLETLLSEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1010370 ABE953_RS01810 WP_410504749.1 425011..426828(+) (pepF) [Ligilactobacillus salivarius strain LZZAY01]
ATGTCTGAAAAGAAAGCAAAAAGATTACTTCAGAGAAATGAAGTTCCAGAAGAATTAACGTGGGATTTAACAAAAGTATT
TAAAAGTGATGAAGAGTTTGAAAAGGAGTACCAAGCTGTAAAAGATGAAGTACAGAACTTCAGAAAATTACAAGGTACAA
CGGATCAAGGTAGTCAAAGATTTTTACAAATTATTGAAAATTTCTTAAGTATTAATAGGAAATTTGAAAAGGTTTATGTA
TATGCAAGTATGAAAAATGATCAAGATACTACAAACGCTAAGTATCAAGGATATAATGAAATGGTTGATGCATTAGCTGC
TGAATTTTCAGAATCTATATCCTGGTTCGAACCTGAGTTACTAGAATTAGATGAAGATAAATTAAAGCAATATTTTGTAG
AAAAAAAAGAATTAAAACAGTATGAACATTTAATTGAGAGTATGTTGGTCATGAGAAAACATACGCTTGATAAAAAAAGT
GAGTCTTTATTAGCTGGAGCTAGTGATATCTTTGGGACATCGCAAAATGTTTTTGGCATTTTAAACAACGCAGATCTAAA
GTTTCCAATAGTAAAAGATGATAATGGTGATGATATTCAATTATCGCATGGTGTTTATGGAAAATTAATAGAATCTACAA
ATAGGGAAGTTAGAAAAGCTGCATTCAAGGGATTATACAGTGTTTATGACCAATTTAAGCATACAATGGCGACAACATTA
ATTGGAAATGTTAAGGTGCATAACTTTAAAGCAAGAGTTCGTAATTATAAAGATGCTAGAGAAGCTGCCACAACATCTAA
TCATATTCCAATAGAAGTCTATGATGTTTTACTGGAACAAGTACACAAAAATCTTCCTTTACTACATCGCTATGTAAAAC
TTAGAAAGAAGATATTAGGTGTCGATGAACTCCATATGTATGATATGTATACACCGTTAACTGAAGATAGTAAGCTTACT
TACAATTACATTCAAGCACAAATTGAAGCTAAAAAAGCACTTGAAGTATTGGGAATGGATTATTTAACGCACGTTAGTGA
AGCATTTGAAAATCGTTGGATAGATGTAGTTGAAAATAAAGGAAAGAGAAGTGGAGCATATTCATCAGGAGTTTATGATA
CTCCGCCATATATCTTATTAAATTGGCAAGATAATTTAGAAAATCTTTTTACCTTGGTACATGAGATGGGACATAGTATG
CATAGTTATTACACTAGTCATAATCAACCCTATCAGTATGGAGATTACCCAATATTTTTGGCAGAAATAGCTTCAACTAC
TAATGAAAATATTTTGATGGATTATCTATTAAAGAATAACGATGAAAAAGAGATATTAATCTATATTTTAAATCATTATT
TAGATGGATTTAAAGGTACGGTATATCGTCAAACACAATTTGCAGAATTTGAAAAATGGATTCATGAACAGAATTCGAAA
GGAGTACCACTAACTGCTAAATCAATTTCTGAATATTACTTAGAATTAAATAAGAAATATTATGGTAGTGATGTGATAAG
TGATCCTGAAATAGCTTTAGAATGGGCTAGAATTCCGCATTTCTATTATAATTTCTATGTTTATCAATATGCGACAGGAT
TTGCGGCAGCAACTACTTTAGCTGAAAATATTTTATCTGGCGATGAAAATAAATTAAACAAATATTTAACTTATTTAAAA
GCTGGTAGTAGTAAATATCCATTAGAAGTCATGAAAGATGCAGGTGTGGATATGACAAATTCTTCATATTTGGAGAAAGC
ATTTAAAGTTTTTGAAGAAAGATTAAATCAATTAGAGACATTATTGTCAGAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(119-188)

Peptidase family M3 (Peptidase_M3)

(209-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.378

97.851

0.522

Multiple sequence alignment