Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   H1X08_RS01395 Genome accession   NZ_LR822025
Coordinates   254306..257626 (+) Length   1106 a.a.
NCBI ID   WP_180482390.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_961     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 249306..262626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1X08_RS01370 (STHERMO_0273) - 250341..251380 (+) 1040 Protein_229 DUF6574 domain-containing protein -
  H1X08_RS01375 (STHERMO_0274) - 251425..251565 (+) 141 WP_167540730.1 hypothetical protein -
  H1X08_RS10510 (STHERMO_0276) - 251842..252102 (+) 261 WP_223899633.1 hypothetical protein -
  H1X08_RS01380 (STHERMO_0277) - 252032..252463 (+) 432 WP_232086946.1 hypothetical protein -
  H1X08_RS11185 - 252681..253114 (+) 434 Protein_233 LytTR family DNA-binding domain-containing protein -
  H1X08_RS01390 (STHERMO_0279) - 253164..253814 (+) 651 WP_232086947.1 hypothetical protein -
  H1X08_RS01395 (STHERMO_0280) rexB 254306..257626 (+) 3321 WP_180482390.1 ATP-dependent nuclease subunit B Machinery gene
  H1X08_RS01400 (STHERMO_0281) rexA 257616..261269 (+) 3654 WP_180482391.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  H1X08_RS01405 (STHERMO_0282) - 261663..262394 (-) 732 WP_179972259.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126701.67 Da        Isoelectric Point: 5.1987

>NTDB_id=1010148 H1X08_RS01395 WP_180482390.1 254306..257626(+) (rexB) [Streptococcus thermophilus isolate STH_CIRM_961]
MKLLYTDMSQDLTEILTEQASSYAQKGKRVFYIAPSALSFEKERKVLEYLPQSASFDITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLLHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLVRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDEALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVVGTYASQKAYKANFVYGNVYQAS
VDFLRTLAQTYKVIPDYVTTDKEGNLSFARISRLLESRHDFSTVDETVIEQDKHALKIWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLHVGQIFRKFDIPYYFGKEESMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQ
EGLDIFEYYVNFADIKGRHKFLSNFTANSRDKYNLDQINTLRSQLIEPLDKFLNSRKQKGSSLLKKLVIFLEAVQLPRQM
VELSTKASEAEKEQNEQVWKAFTHILEQVETIFGDESLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSKRGHFMAMSLLNAASEQLVLSQPQIINESQDD
MSVYLKELLDLGIPLVEKGRNRFEAKGDQIGNYRDLLSTVIALNSSHLDLDLDKETKTFWSVAVRYLRKRLDKDQVLIPK
VIDDVTTTKVDDQVMQLVFPKEEPLKLSATALTTFYNNQYLYFLRYVLELEELESIHPDARHHGTYLHRVFERVMGDSSS
ESFDDKLEKAIAQTNQDHPFEILYTEDQESRFSLQILEDIARSTASVLRDNAAVKVEREEVKFDLLLENSIKITGIIDRV
DRLTDGALGVVDYKTGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQVPQLNLAQIGLEKLAAQAHK
ELTYKGLFVASETEHLTGGNYDLQKTVTYDKEDLETLLEYNIKLFRSAAEVIRSGNFAINPYTEDGKSVQGDQIKSITHF
EADRHMGQARKLLRLPKKGKKEAYLELMAKTEEENQMQVSENPISFSVIDHAVRVDKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=1010148 H1X08_RS01395 WP_180482390.1 254306..257626(+) (rexB) [Streptococcus thermophilus isolate STH_CIRM_961]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCGTCTAGCTATGCTCAAAAGGG
AAAGAGGGTTTTTTATATTGCTCCTAGTGCCCTATCCTTTGAAAAGGAGCGAAAGGTTTTAGAATACCTGCCTCAGTCAG
CATCTTTTGACATTACGGTGACTCGTTTTACTCAGATGGCTAGGTATTTTATTCTCAATACGAGTAACCCAAAGACTCAG
TTGGATGATACAGGTTTGGCCATGATTTTTTATAAAGTGTTGTTGCACATGGGCGATGATGAGCTCAAGGTCTATGGCCG
TTTGCGTAAGGATAGCAACTTTATTAATCAATTGGTGGACCTTTATAAAGAGTTGCAGCAGGCCAATATGACAGTATTGG
ATTTGCAGCATTTGGATCAGGTTGAAAAACAAGAGGATTTGGTAAGGATTTTCAGTGCAGCTCAGGACCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAGCTCAGTGCCTTCTTTAAGGAAATCACCTCAGGGCATCTGGATGAGGCCTTGAGTAA
CACAGTTTTGGTCATTGATGGTTTTACCCGTTTCTCGGCTGAGGAGGAGGCTCTGGTTGCACTCTTGAACGACAAGTGCC
ACCAGATTGTAGTTGGGACCTATGCTAGTCAAAAAGCTTATAAGGCCAATTTTGTTTATGGCAATGTTTATCAGGCCTCA
GTGGACTTCTTGAGGACTTTGGCTCAGACATATAAAGTGATACCCGACTACGTGACGACAGACAAGGAGGGCAATCTTTC
TTTTGCGCGTATTAGTCGTCTTTTGGAGAGCCGTCATGACTTTAGTACGGTAGATGAGACGGTAATTGAGCAGGATAAGC
ATGCCCTGAAGATTTGGGAAGTGGTCAACCAGAAAGAAGAAGTGGCCCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCA
GATGGCAAGCGTTACAAGGATATTTTGGTCTTGCTTGGTGACGAGGAGAGTTACAAGCTTCACGTGGGGCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGCAAGGAAGAAAGCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCGCTAG
AGCGTATCAAGCGCTATAACTACCGTGCTGAGGATTTGCTTAACCTTGTAAAATCCGGTCTCTATGGTGGTTTTGCTCAA
GAGGGTTTAGACATTTTTGAGTATTATGTCAATTTTGCGGATATCAAGGGGCGTCATAAATTCTTGTCTAATTTTACAGC
TAATAGTCGTGATAAGTATAATTTAGACCAGATCAATACCTTGCGGTCACAATTGATAGAGCCCTTGGACAAGTTTCTTA
ATAGTCGCAAACAAAAGGGATCTAGTCTACTCAAGAAACTGGTGATCTTTTTAGAGGCTGTGCAACTGCCAAGGCAGATG
GTTGAATTGTCCACCAAGGCCAGTGAAGCTGAAAAAGAACAGAATGAACAGGTTTGGAAGGCTTTCACTCATATCTTGGA
GCAGGTTGAGACTATCTTTGGAGACGAATCGCTCTCAGTAGACGACTTTTTGTCTATCTTGCGTTCGGGAATGTTGGCCT
GTGATTACCGTACGGTTCCAGCCACTGTTGATGTGGTCAATGTGAAAAAATACGACTTAATACAGCCACATTCGGCTCCG
TATGTTTTTGCCTTGGGGATGACCCAGTCACATTTTCCTAAGGTAGGACAAAATAAGAGTCTCCTGTCTGATGAGGAGCG
TAGTCGTATCAATGAGGCGACGGATGAGCACAGGAGTTTGGATATTGTTACGCAGAGCAATAGTAAGCGAGGTCATTTCA
TGGCTATGTCGCTTTTGAATGCTGCTAGTGAACAATTAGTGCTTAGTCAGCCACAAATTATAAATGAAAGTCAAGATGAC
ATGTCGGTTTATTTGAAGGAGCTTCTTGACCTTGGTATTCCTTTGGTGGAAAAGGGACGCAATCGTTTCGAAGCAAAGGG
GGACCAGATTGGGAACTATAGAGACCTTCTGTCGACTGTCATTGCCCTTAACAGTAGCCATTTGGATCTTGACTTGGACA
AAGAAACCAAGACTTTCTGGTCGGTTGCTGTACGTTATCTCCGTAAGCGACTTGATAAGGATCAAGTCTTGATTCCAAAG
GTGATTGACGATGTGACGACAACCAAGGTGGACGATCAGGTCATGCAGTTGGTCTTTCCGAAGGAAGAACCACTGAAATT
ATCAGCTACAGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGAACTTGAGGAGCTAG
AGTCTATCCATCCGGATGCTCGACACCATGGGACTTATTTACACCGAGTCTTTGAGCGTGTGATGGGTGATTCGTCGTCA
GAAAGCTTCGATGATAAATTGGAAAAGGCCATTGCTCAGACCAATCAGGATCACCCTTTTGAAATTCTCTATACTGAGGA
CCAAGAGAGTCGTTTCTCACTTCAGATTTTGGAGGACATAGCGCGTTCAACAGCCAGTGTTCTACGTGACAATGCGGCGG
TTAAGGTTGAGCGTGAGGAAGTCAAGTTTGACTTGCTTTTAGAAAATAGCATCAAGATTACTGGGATTATTGACCGAGTG
GACCGTTTAACAGATGGTGCTCTGGGTGTTGTTGACTATAAAACAGGTAAAAATGTCTTTGATATTCAGAAATTCTACAA
TGGCCTAAGTCCGCAATTGGTGACCTATCTGGAGGCTCTCCGTCAAACCTATAAGGTTGATGCTGATCAACTTTTTGGGG
CTATGTATCTTCACATGCAGGTCCCACAGCTTAACCTAGCTCAGATTGGTTTGGAAAAGCTAGCGGCTCAGGCTCATAAG
GAATTGACTTATAAGGGACTTTTTGTGGCTTCAGAAACGGAGCATTTGACTGGTGGAAACTATGATCTGCAAAAGACTGT
CACCTATGACAAGGAGGATTTAGAAACCTTGTTGGAATACAATATTAAGCTCTTTAGGAGTGCTGCTGAAGTTATTCGAA
GTGGGAATTTTGCGATCAATCCTTATACTGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGTCTATTACTCACTTC
GAGGCCGACCGCCACATGGGACAGGCTCGTAAACTCTTGCGTTTACCCAAAAAGGGCAAGAAGGAAGCCTATTTGGAGTT
GATGGCAAAAACTGAGGAAGAGAATCAGATGCAAGTTTCTGAAAATCCTATCTCCTTTTCAGTCATTGATCATGCTGTGA
GAGTAGACAAAAAAGACCAGGAGGATAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.199

98.373

0.425