Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   P303_RS03480 Genome accession   NZ_CP006740
Coordinates   770135..770824 (+) Length   229 a.a.
NCBI ID   WP_011097770.1    Uniprot ID   B2IAF1
Organism   Xylella fastidiosa MUL0034     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 765135..775824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P303_RS03450 (P303_03690) - 765355..765597 (+) 243 WP_004087863.1 type B 50S ribosomal protein L31 -
  P303_RS03455 (P303_03695) - 765824..767113 (+) 1290 WP_004087864.1 citrate synthase -
  P303_RS03460 (P303_03700) rpsI 767330..767722 (-) 393 WP_040123133.1 30S ribosomal protein S9 -
  P303_RS03465 (P303_03705) rplM 767727..768155 (-) 429 WP_004083669.1 50S ribosomal protein L13 -
  P303_RS03470 (P303_03710) coq7 768376..769029 (+) 654 WP_038229201.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  P303_RS03475 (P303_03715) speD 769198..769992 (-) 795 WP_004083667.1 adenosylmethionine decarboxylase -
  P303_RS03480 (P303_03720) crp 770135..770824 (+) 690 WP_011097770.1 cAMP-activated global transcriptional regulator CRP Regulator
  P303_RS12435 - 771226..771399 (+) 174 WP_225621606.1 hypothetical protein -
  P303_RS03485 (P303_03725) - 771609..771788 (+) 180 WP_228762825.1 hypothetical protein -
  P303_RS03490 (P303_03730) - 771806..772006 (+) 201 WP_038229160.1 hypothetical protein -
  P303_RS03495 (P303_03735) - 772087..772278 (+) 192 WP_230577678.1 hypothetical protein -
  P303_RS03500 (P303_03740) - 772669..773466 (-) 798 WP_038229164.1 tRNA threonylcarbamoyladenosine dehydratase -
  P303_RS03505 (P303_03745) - 774237..774698 (+) 462 WP_038229166.1 glycine zipper 2TM domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25511.27 Da        Isoelectric Point: 9.6366

>NTDB_id=100997 P303_RS03480 WP_011097770.1 770135..770824(+) (crp) [Xylella fastidiosa MUL0034]
MTIGNTTSVTTVRNATPPLALDNAAIERFLAHSHRRRYPNRTDVFRPGDPAGTLYYVISGSISIIAEEDDHRELVLGYFG
AGEFVGEMGLFIESDAREVILRTRTQCELAEVSYERLHQLLQGSLASDAPRILYAIGMQLSKRLLLTTRKASRLAFLDVG
DRILRTLHDLARDPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGTR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=100997 P303_RS03480 WP_011097770.1 770135..770824(+) (crp) [Xylella fastidiosa MUL0034]
ATGACTATAGGGAACACTACGAGTGTGACAACGGTACGTAACGCTACTCCGCCTTTAGCTCTCGACAATGCGGCGATCGA
GCGCTTCTTGGCTCACAGTCATCGACGCCGCTACCCCAACCGAACGGATGTGTTTAGGCCTGGTGACCCTGCTGGAACCC
TTTACTATGTTATCAGCGGGTCTATCAGCATCATCGCCGAGGAAGACGATCATCGTGAGCTGGTTCTTGGCTATTTCGGC
GCAGGTGAGTTTGTGGGTGAGATGGGTTTATTCATCGAATCCGATGCTCGTGAAGTCATCTTACGTACACGGACTCAGTG
TGAATTGGCTGAGGTAAGTTACGAGCGCTTGCACCAGCTGTTGCAAGGCAGTTTAGCGAGTGATGCGCCGCGGATTTTGT
ATGCGATAGGTATGCAGTTATCTAAGCGTTTATTGCTTACCACCCGTAAGGCGAGTCGTCTGGCTTTTCTGGATGTGGGG
GATCGGATCTTGCGCACCTTACATGATCTGGCTCGCGATCCAGAGGCAATGAGTCATCCTCAGGGTACACAGTTGAGGGT
GTCACGTCAGGAGCTTGCGCGTCTGGTTGGATGCTCGCGTGAAATGGCTGGACGTGTGCTTAAGAAGTTGCAAGCGGATG
GTCTGTTACATGCGCGCGGCAAAACCGTTGTTCTGTACGGAACGCGTTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(35-122)

Bacterial regulatory proteins, crp family (Crp)

(185-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2IAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

45.411

90.393

0.41
  crp Acinetobacter baumannii D1279779

45.588

89.083

0.406
  crp Vibrio cholerae strain A1552

42.995

90.393

0.389

Multiple sequence alignment