Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   H0511_RS02410 Genome accession   NZ_LR822017
Coordinates   449696..450655 (+) Length   319 a.a.
NCBI ID   WP_179974292.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 444696..455655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS02400 (STHERMO_0497) metG 445224..447227 (+) 2004 WP_100273301.1 methionine--tRNA ligase -
  H0511_RS02405 (STHERMO_0498) - 447505..448401 (-) 897 WP_179974291.1 LysR family transcriptional regulator -
  H0511_RS02410 (STHERMO_0500) coiA 449696..450655 (+) 960 WP_179974292.1 competence protein CoiA Machinery gene
  H0511_RS02415 (STHERMO_0501) pepF 450666..452471 (+) 1806 WP_179974293.1 oligoendopeptidase F Regulator
  H0511_RS02420 (STHERMO_0503) - 452653..453360 (+) 708 WP_179974294.1 O-methyltransferase -
  H0511_RS02425 (STHERMO_0504) - 453422..454564 (+) 1143 WP_179974295.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38084.98 Da        Isoelectric Point: 9.1721

>NTDB_id=1009730 H0511_RS02410 WP_179974292.1 449696..450655(+) (coiA) [Streptococcus thermophilus isolate STH_CIRM_336]
MLIAKNQKGLLVSALENGLNREETYRCPGCQGIVLLRQGKVICPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFIGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGQELWLGQRLTDLQRDFLYFTTKI
GFHLWELDWEREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQARKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKHGFVQIRLSIDGFEKLFMQYYRKRDFSYKQTLCPPNFYAKIVDYRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1009730 H0511_RS02410 WP_179974292.1 449696..450655(+) (coiA) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGTTAATCGCTAAAAATCAGAAAGGGCTCTTGGTTTCGGCTCTTGAAAATGGGTTGAATCGTGAGGAAACTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTGATATGCCCGCATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAATGAATCGGCCCAACATTTATCCCTAAAAGCCACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAGATTGCGGATTTATTCATTGGAGATTCCTTAGCCTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTGCGAT
GGCTTTTGGGGCAAGAACTGTGGTTGGGACAGCGTTTAACAGATCTACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTCTGGGAACTTGATTGGGAGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGCCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGGCAGGAGGAGGCTTATCTTAAGGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCTGAGTCTAAGCATGGATTTGTCCAAATTAGATTATCTATTGATGGTTTTGAAAAGCTTTTCATGCAGTATTATC
GAAAAAGGGATTTTTCTTACAAGCAAACCCTGTGCCCTCCCAACTTTTATGCTAAAATAGTAGATTATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.016

97.492

0.439
  coiA Streptococcus mitis NCTC 12261

45.016

97.492

0.439
  coiA Streptococcus pneumoniae Rx1

44.695

97.492

0.436
  coiA Streptococcus pneumoniae D39

44.695

97.492

0.436
  coiA Streptococcus pneumoniae R6

44.695

97.492

0.436