Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   GPW69_RS00760 Genome accession   NZ_LR738724
Coordinates   116192..116599 (+) Length   135 a.a.
NCBI ID   WP_074391329.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 111192..121599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS00735 - 112591..112965 (+) 375 WP_024385120.1 DUF1033 family protein -
  GPW69_RS00740 - 112993..113943 (-) 951 WP_074391326.1 S66 peptidase family protein -
  GPW69_RS00745 comGA 114029..114979 (+) 951 WP_074391327.1 competence type IV pilus ATPase ComGA Machinery gene
  GPW69_RS00750 comGB 114891..115928 (+) 1038 WP_269472402.1 competence type IV pilus assembly protein ComGB Machinery gene
  GPW69_RS00755 comGC 115930..116211 (+) 282 WP_074391328.1 competence type IV pilus major pilin ComGC Machinery gene
  GPW69_RS00760 comGD/cglD 116192..116599 (+) 408 WP_074391329.1 competence type IV pilus minor pilin ComGD Machinery gene
  GPW69_RS00765 comGE 116571..116864 (+) 294 WP_024401507.1 competence type IV pilus minor pilin ComGE Machinery gene
  GPW69_RS00770 comGF/cglF 116851..117285 (+) 435 WP_044762030.1 competence type IV pilus minor pilin ComGF Machinery gene
  GPW69_RS00775 comGG 117263..117676 (+) 414 WP_074391330.1 competence type IV pilus minor pilin ComGG -
  GPW69_RS00780 comGH 117726..118679 (+) 954 WP_024414316.1 class I SAM-dependent methyltransferase Machinery gene
  GPW69_RS00785 - 118729..119916 (+) 1188 WP_044680792.1 acetate kinase -
  GPW69_RS00790 - 120233..120784 (+) 552 WP_074391332.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15181.30 Da        Isoelectric Point: 9.6759

>NTDB_id=1007119 GPW69_RS00760 WP_074391329.1 116192..116599(+) (comGD/cglD) [Streptococcus suis isolate 9401240]
MLRRKNKAFTLFESLLTLFVVSFLAVSLSGTVQTAFQSVQEEIFLWEFEGIYKDSQKLAASSHQTVSLAIGGQEVTNGYQ
AVQVPRNVEVLEGKTITFEENGGNSSLAKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=1007119 GPW69_RS00760 WP_074391329.1 116192..116599(+) (comGD/cglD) [Streptococcus suis isolate 9401240]
ATGCTACGGCGAAAAAATAAGGCCTTCACCCTGTTTGAAAGTCTGCTGACCTTGTTTGTTGTCAGTTTTTTAGCTGTTTC
TTTATCAGGAACGGTGCAAACGGCCTTTCAGTCTGTTCAAGAAGAGATTTTTCTCTGGGAATTTGAGGGCATCTATAAAG
ACAGTCAGAAACTGGCAGCTAGTTCCCACCAAACAGTGAGTCTAGCTATCGGTGGACAGGAGGTTACCAATGGTTATCAG
GCTGTACAGGTACCCAGAAATGTAGAAGTATTGGAAGGGAAGACCATCACATTTGAAGAAAATGGTGGAAATTCTTCTCT
GGCCAAGATTCGTTTTCGGCTTAGTCGAAAGACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus pneumoniae D39

48.062

95.556

0.459
  comGD/cglD Streptococcus pneumoniae Rx1

48.062

95.556

0.459
  comGD/cglD Streptococcus pneumoniae R6

48.062

95.556

0.459
  comGD/cglD Streptococcus pneumoniae TIGR4

48.062

95.556

0.459
  comGD/cglD Streptococcus mitis NCTC 12261

47.287

95.556

0.452
  comGD/cglD Streptococcus mitis SK321

47.287

95.556

0.452
  comGD Streptococcus mutans UA140

47.287

95.556

0.452
  comGD Streptococcus mutans UA159

47.287

95.556

0.452
  comGD Streptococcus gordonii str. Challis substr. CH1

47.244

94.074

0.444
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363