Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   FQT45_RS09675 Genome accession   NZ_LR595858
Coordinates   1965302..1965754 (-) Length   150 a.a.
NCBI ID   WP_077322597.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC10228     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1960302..1970754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT45_RS09660 (NCTC10228_01992) - 1960928..1961713 (-) 786 WP_077322594.1 epoxyqueuosine reductase QueH -
  FQT45_RS09665 (NCTC10228_01993) - 1961813..1963597 (-) 1785 WP_077322595.1 ABC transporter ATP-binding protein -
  FQT45_RS09670 (NCTC10228_01994) - 1963597..1965309 (-) 1713 WP_077322596.1 ABC transporter ATP-binding protein -
  FQT45_RS09675 (NCTC10228_01995) rcrR 1965302..1965754 (-) 453 WP_077322597.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  FQT45_RS09680 (NCTC10228_01996) - 1965949..1966965 (+) 1017 WP_077322598.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  FQT45_RS09685 (NCTC10228_01997) galU 1966991..1967899 (+) 909 WP_007892351.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  FQT45_RS09690 (NCTC10228_01998) - 1967948..1968619 (-) 672 WP_077322599.1 rhomboid family intramembrane serine protease -
  FQT45_RS09695 (NCTC10228_01999) - 1968616..1969143 (-) 528 WP_077322600.1 5-formyltetrahydrofolate cyclo-ligase -
  FQT45_RS09700 (NCTC10228_02000) - 1969782..1970147 (-) 366 WP_077322601.1 PTS glucitol/sorbitol transporter subunit IIA -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17495.29 Da        Isoelectric Point: 8.4683

>NTDB_id=1006434 FQT45_RS09675 WP_077322597.1 1965302..1965754(-) (rcrR) [Streptococcus pseudoporcinus strain NCTC10228]
MSRIIADLRDLTHQIEQISEEIAKRYNLAHLAGPQGHVLIFLSRNVERELFVKDIETELGISKSVASNLVKRMEKNGFIK
VIPSQTDKRYKQVVMAQKGVEKLPLLQECRKDVENYFFKEISREEFCVVRKVIDQLKQNMLDYKKGEEDA

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1006434 FQT45_RS09675 WP_077322597.1 1965302..1965754(-) (rcrR) [Streptococcus pseudoporcinus strain NCTC10228]
ATGTCACGGATTATTGCTGATCTAAGAGACTTAACTCATCAAATAGAACAAATTAGTGAAGAAATTGCCAAAAGGTATAA
TCTTGCTCATCTAGCTGGACCTCAAGGGCATGTTTTGATCTTCTTGAGTAGAAATGTTGAAAGAGAACTATTTGTTAAAG
ATATCGAAACAGAGCTTGGAATTTCAAAATCAGTTGCTAGTAATCTTGTTAAACGGATGGAAAAAAATGGTTTCATCAAA
GTCATACCCTCTCAGACAGATAAGCGTTACAAACAAGTCGTAATGGCACAAAAAGGGGTAGAGAAGCTGCCCCTTTTACA
AGAATGTCGTAAAGATGTTGAAAACTATTTCTTTAAGGAAATCTCAAGGGAGGAATTTTGCGTTGTCCGAAAAGTGATAG
ATCAACTCAAACAAAATATGCTTGACTATAAAAAAGGAGAAGAAGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

45.714

93.333

0.427