Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ABHN08_RS19470 | Genome accession | NZ_CP157354 |
| Coordinates | 4297825..4298697 (+) | Length | 290 a.a. |
| NCBI ID | WP_122747336.1 | Uniprot ID | - |
| Organism | Pseudomonas atacamensis strain GY-AP11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4292825..4303697
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABHN08_RS19445 (ABHN08_19445) | - | 4293048..4293347 (+) | 300 | WP_348970149.1 | DUF2845 domain-containing protein | - |
| ABHN08_RS19450 (ABHN08_19450) | - | 4293612..4293965 (-) | 354 | WP_016773155.1 | BON domain-containing protein | - |
| ABHN08_RS19455 (ABHN08_19455) | - | 4294260..4294676 (-) | 417 | WP_056790436.1 | pilin | - |
| ABHN08_RS19460 (ABHN08_19460) | pilB | 4294903..4296603 (+) | 1701 | WP_073475466.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABHN08_RS19465 (ABHN08_19465) | pilC | 4296606..4297823 (+) | 1218 | WP_024014342.1 | type II secretion system F family protein | Machinery gene |
| ABHN08_RS19470 (ABHN08_19470) | pilD | 4297825..4298697 (+) | 873 | WP_122747336.1 | prepilin peptidase | Machinery gene |
| ABHN08_RS19475 (ABHN08_19475) | coaE | 4298694..4299317 (+) | 624 | WP_186569367.1 | dephospho-CoA kinase | - |
| ABHN08_RS19480 (ABHN08_19480) | yacG | 4299314..4299514 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| ABHN08_RS19485 (ABHN08_19485) | - | 4299522..4299737 (-) | 216 | WP_016773148.1 | hypothetical protein | - |
| ABHN08_RS19490 (ABHN08_19490) | - | 4299803..4300492 (-) | 690 | WP_016773147.1 | energy-coupling factor ABC transporter permease | - |
| ABHN08_RS19495 (ABHN08_19495) | - | 4300610..4301236 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| ABHN08_RS19500 (ABHN08_19500) | - | 4301233..4301760 (+) | 528 | WP_024014346.1 | MOSC domain-containing protein | - |
| ABHN08_RS19505 (ABHN08_19505) | - | 4301812..4301985 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| ABHN08_RS19510 (ABHN08_19510) | - | 4302049..4303347 (+) | 1299 | WP_016773144.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31968.18 Da Isoelectric Point: 7.3452
>NTDB_id=1006214 ABHN08_RS19470 WP_122747336.1 4297825..4298697(+) (pilD) [Pseudomonas atacamensis strain GY-AP11]
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLCLRGRCSACSAPISRRYPLTELACGLLSAFIAWHLGFGWPASLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLCLRGRCSACSAPISRRYPLTELACGLLSAFIAWHLGFGWPASLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=1006214 ABHN08_RS19470 WP_122747336.1 4297825..4298697(+) (pilD) [Pseudomonas atacamensis strain GY-AP11]
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTCGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGCTTGCCGAAAATGCTTGAGCGTGACTGGCGCCAGCAAGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCCGTGCCGACCTACAACCTGATGCTGCCGCATTCCGCGTGCCCGCATTGCGGACATCGGATCCGC
CCGTGGGAAAACATTCCGCTGCTCAGTTACCTGTGCCTGCGCGGGCGCTGCTCGGCCTGTTCGGCGCCGATCAGTAGACG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCATTCATCGCCTGGCATCTGGGCTTCGGCTGGCCGGCGAGCT
TGCTGATTTTGCTGACGTGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGTTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCAGATGCATTGTGGGGCGCGGT
GGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACTGGCAAGGACGGCATCGGTCATGGCGATT
TCAAGCTGTTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCCTTGGTGGGG
GCGATTTTGGGCGTCGTCATGCTGCGCCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGGCCCTTTCTCGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTCGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTCTGGCGCTTGCCGAAAATGCTTGAGCGTGACTGGCGCCAGCAAGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCCGTGCCGACCTACAACCTGATGCTGCCGCATTCCGCGTGCCCGCATTGCGGACATCGGATCCGC
CCGTGGGAAAACATTCCGCTGCTCAGTTACCTGTGCCTGCGCGGGCGCTGCTCGGCCTGTTCGGCGCCGATCAGTAGACG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCATTCATCGCCTGGCATCTGGGCTTCGGCTGGCCGGCGAGCT
TGCTGATTTTGCTGACGTGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGTTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCAGATGCATTGTGGGGCGCGGT
GGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACTGGCAAGGACGGCATCGGTCATGGCGATT
TCAAGCTGTTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCCTTGGTGGGG
GCGATTTTGGGCGTCGTCATGCTGCGCCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGGCCCTTTCTCGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.225 |
97.931 |
0.531 |
| pilD | Vibrio campbellii strain DS40M4 |
52.632 |
98.276 |
0.517 |
| pilD | Neisseria gonorrhoeae MS11 |
45.993 |
98.966 |
0.455 |
| pilD | Acinetobacter baumannii D1279779 |
47.08 |
94.483 |
0.445 |
| pilD | Acinetobacter nosocomialis M2 |
47.08 |
94.483 |
0.445 |