Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABG082_RS07860 Genome accession   NZ_CP157353
Coordinates   1534757..1535536 (+) Length   259 a.a.
NCBI ID   WP_041108981.1    Uniprot ID   -
Organism   Bacillus sp. BS1807G30     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1529757..1540536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG082_RS07840 (ABG082_07840) trmFO 1530461..1531765 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABG082_RS07845 (ABG082_07845) xerC 1531828..1532745 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  ABG082_RS07850 (ABG082_07850) hslV 1532760..1533305 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  ABG082_RS07855 (ABG082_07855) hslU 1533322..1534722 (+) 1401 WP_017367242.1 HslU--HslV peptidase ATPase subunit -
  ABG082_RS07860 (ABG082_07860) codY 1534757..1535536 (+) 780 WP_041108981.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABG082_RS07865 (ABG082_07865) flgB 1535825..1536214 (+) 390 WP_198406498.1 flagellar basal body rod protein FlgB -
  ABG082_RS07870 (ABG082_07870) flgC 1536214..1536666 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  ABG082_RS07875 (ABG082_07875) fliE 1536678..1536995 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  ABG082_RS07880 (ABG082_07880) fliF 1537046..1538638 (+) 1593 WP_210552433.1 flagellar basal-body MS-ring/collar protein FliF -
  ABG082_RS07885 (ABG082_07885) fliG 1538650..1539666 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  ABG082_RS07890 (ABG082_07890) fliH 1539659..1540423 (+) 765 WP_017359090.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29003.26 Da        Isoelectric Point: 4.7176

>NTDB_id=1006166 ABG082_RS07860 WP_041108981.1 1534757..1535536(+) (codY) [Bacillus sp. BS1807G30]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1006166 ABG082_RS07860 WP_041108981.1 1534757..1535536(+) (codY) [Bacillus sp. BS1807G30]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCTATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCCGGTTTGACAACGATTGTGCCAATTATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGTTCTCTTTCATATAGTGAGCTTGAGGCGAT
TGAGCATATCTTTGAAGAACTTGATGGCAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.638

98.069

0.467

Multiple sequence alignment