Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL305_RS09315 Genome accession   NZ_LR134528
Coordinates   1554339..1554803 (+) Length   154 a.a.
NCBI ID   WP_025461773.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC12163     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1549339..1559803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL305_RS09315 (NCTC12163_01551) comE 1554339..1554803 (+) 465 WP_025461773.1 ComEA family DNA-binding protein Machinery gene
  EL305_RS09320 (NCTC12163_01552) dnaJ 1555073..1556194 (+) 1122 WP_002215274.1 molecular chaperone DnaJ -
  EL305_RS09325 (NCTC12163_01553) - 1556389..1558407 (+) 2019 WP_002236572.1 OPT family oligopeptide transporter -
  EL305_RS09330 (NCTC12163_01554) rfbC 1558450..1559005 (-) 556 Protein_1562 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16531.78 Da        Isoelectric Point: 10.8645

>NTDB_id=1003665 EL305_RS09315 WP_025461773.1 1554339..1554803(+) (comE) [Neisseria meningitidis strain NCTC12163]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1003665 EL305_RS09315 WP_025461773.1 1554339..1554803(+) (comE) [Neisseria meningitidis strain NCTC12163]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGTGCGCCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747
  comE Neisseria gonorrhoeae MS11

94.262

79.221

0.747

Multiple sequence alignment