Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EL323_RS06320 Genome accession   NZ_LR134526
Coordinates   1091099..1091767 (-) Length   222 a.a.
NCBI ID   WP_002259882.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10026     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1086099..1096767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL323_RS06300 (NCTC10026_01050) pilX 1088449..1088922 (-) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  EL323_RS06305 (NCTC10026_01051) pilK 1088927..1089520 (-) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL323_RS06310 (NCTC10026_01052) pilJ 1089499..1090452 (-) 954 WP_002259883.1 PilW family protein Machinery gene
  EL323_RS06315 (NCTC10026_01053) pilV 1090449..1091069 (-) 621 WP_002253554.1 type IV pilus modification protein PilV Regulator
  EL323_RS06320 (NCTC10026_01054) pilH 1091099..1091767 (-) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL323_RS06330 (NCTC10026_01055) dnaB 1092069..1093475 (-) 1407 WP_002219448.1 replicative DNA helicase -
  EL323_RS06340 (NCTC10026_01056) - 1093638..1094225 (+) 588 WP_002246908.1 superoxide dismutase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24781.37 Da        Isoelectric Point: 9.9145

>NTDB_id=1003577 EL323_RS06320 WP_002259882.1 1091099..1091767(-) (pilH) [Neisseria meningitidis strain NCTC10026]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKGGAPN
NKCDFGKKGQGMLAFGDKNGNKTYDGDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSRFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=1003577 EL323_RS06320 WP_002259882.1 1091099..1091767(-) (pilH) [Neisseria meningitidis strain NCTC10026]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCATGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGAGAAGCCGTCCGGCTCAATCTTCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTGCGCCCAAC
AATAAATGTGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TACGGCGGATGTTCTCCTTCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTTAACCATA
TCGCTTTCGGTCAAACGCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAGATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.068

99.55

0.847