Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFG87_RS01955 Genome accession   NZ_CP156074
Coordinates   443066..444556 (+) Length   496 a.a.
NCBI ID   WP_375591957.1    Uniprot ID   -
Organism   Chitiniphilus eburneus strain YS-30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 438066..449556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFG87_RS01925 - 438181..439410 (+) 1230 WP_136772021.1 acetate/propionate family kinase -
  ABFG87_RS01930 - 439469..440359 (+) 891 WP_136772020.1 BPSS1780 family membrane protein -
  ABFG87_RS01935 - 440380..440751 (+) 372 WP_136772019.1 diacylglycerol kinase -
  ABFG87_RS01940 - 440816..441289 (-) 474 WP_246038472.1 DUF2721 domain-containing protein -
  ABFG87_RS01945 - 441219..441974 (-) 756 WP_026262692.1 LytTR family DNA-binding domain-containing protein -
  ABFG87_RS01950 - 441940..442977 (-) 1038 WP_211243362.1 sensor histidine kinase -
  ABFG87_RS01955 comM 443066..444556 (+) 1491 WP_375591957.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFG87_RS01960 - 444580..444930 (-) 351 WP_136771998.1 hypothetical protein -
  ABFG87_RS01965 parE 445094..447067 (+) 1974 WP_136771997.1 DNA topoisomerase IV subunit B -
  ABFG87_RS01970 - 447204..448109 (+) 906 WP_136771996.1 phosphotransferase -
  ABFG87_RS01975 - 448110..448772 (-) 663 Protein_390 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52659.85 Da        Isoelectric Point: 8.0669

>NTDB_id=1001622 ABFG87_RS01955 WP_375591957.1 443066..444556(+) (comM) [Chitiniphilus eburneus strain YS-30]
MSLAIVHSRALVGLAAHPVVVEVHLANGLPAFNLVGLPETEVKESRERVRAALTVCGFEFPNRRITVNLAPADLPKSSGL
YDLPIALGILAASDQLPARPLAEYEFAGELGLTGELRPVRGGIALARAASRDRRALILPMAAAGEAALIPDATVHGAHHL
LEVCKHFAAGEMLPVVPTSAMCASTSYPDMADVRGQGQAKRALEIAAAGRHSLLLMGPPGTGKSMLAQRLPGLLPPLSAD
EALEAAAVQSLSRGGFDPATFGHRPFRTPHHTASAVALVGGGSTPLPGEVSLAHHGILFLDELPEFDRKVLEVLREPLEN
GHIHISRAAHSAVFPACFQFVGAMNPCPCGYLGHPQKACRCTPEQIARYRGKLSGPLLDRVDLVVEVPALPASALQEARS
GDSSKRIRERVQRSHECQVARQGKNNAALQAAEVDMHCTAEDAARLLLAQAMEKLGLSARAYHRLLRVGRTIADLDGAAA
IAARHMAEAIQLRRLL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1001622 ABFG87_RS01955 WP_375591957.1 443066..444556(+) (comM) [Chitiniphilus eburneus strain YS-30]
ATGTCGCTAGCCATTGTCCACAGTCGCGCCCTGGTCGGGCTTGCGGCGCACCCCGTCGTCGTCGAAGTCCATCTTGCCAA
TGGCTTGCCGGCTTTCAATCTGGTCGGGCTTCCCGAAACCGAGGTCAAGGAAAGCCGCGAACGGGTTCGCGCCGCACTGA
CCGTCTGCGGCTTCGAGTTTCCCAATCGCCGGATCACCGTCAATCTGGCCCCCGCCGACCTGCCAAAATCCTCCGGGCTT
TACGATCTGCCGATCGCCCTGGGCATCCTTGCCGCCAGCGACCAGCTGCCCGCGCGCCCATTGGCGGAGTATGAGTTCGC
GGGGGAGCTGGGCCTCACTGGAGAATTGCGGCCGGTACGCGGCGGTATCGCCCTGGCCCGTGCCGCCAGCCGTGATCGTC
GTGCGCTGATCCTGCCGATGGCCGCGGCAGGCGAAGCCGCCTTGATCCCCGATGCAACGGTCCACGGCGCCCATCATCTG
CTGGAAGTCTGTAAGCATTTTGCGGCAGGCGAGATGCTACCCGTAGTCCCTACGTCAGCCATGTGCGCATCGACCAGCTA
TCCCGATATGGCCGACGTACGGGGACAGGGTCAAGCCAAGCGGGCGCTGGAAATCGCAGCGGCGGGGCGGCACAGCCTGT
TGCTGATGGGGCCGCCAGGCACCGGCAAATCGATGCTGGCACAGCGCCTGCCTGGCTTGCTACCCCCTTTGAGCGCGGAC
GAAGCGCTTGAAGCCGCCGCCGTGCAATCGCTCTCTCGCGGTGGCTTCGATCCCGCCACCTTCGGGCATCGCCCCTTCAG
AACGCCTCATCACACCGCTTCGGCGGTTGCACTGGTCGGTGGCGGCAGCACGCCGCTGCCTGGCGAGGTATCGCTGGCTC
ATCACGGTATCCTGTTCCTCGACGAGCTGCCCGAGTTCGACCGCAAGGTGCTGGAAGTCCTGCGGGAGCCACTGGAAAAC
GGCCACATCCATATCAGCCGGGCTGCGCACAGTGCTGTGTTTCCGGCGTGCTTCCAGTTCGTCGGCGCGATGAACCCGTG
CCCTTGCGGATACCTGGGCCATCCGCAGAAAGCCTGCCGCTGCACCCCGGAGCAGATTGCGCGGTATCGCGGCAAACTGT
CGGGCCCGCTGCTGGATCGGGTCGATCTGGTGGTCGAAGTGCCTGCCTTGCCCGCATCCGCATTGCAGGAGGCAAGATCG
GGCGATTCGAGCAAGCGGATACGGGAGCGGGTTCAGCGTTCGCATGAATGCCAGGTGGCGCGGCAGGGGAAAAACAACGC
CGCGTTGCAGGCCGCAGAAGTGGATATGCATTGCACGGCGGAAGACGCTGCGCGATTGCTGTTGGCCCAGGCCATGGAGA
AACTGGGGCTATCCGCGCGGGCATATCACCGGCTGTTGCGTGTAGGGCGCACCATCGCCGATCTGGATGGCGCCGCCGCC
ATCGCAGCCCGACATATGGCCGAAGCCATTCAGCTGCGCCGTTTGCTTTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.333

99.798

0.532
  comM Haemophilus influenzae Rd KW20

52.39

100

0.53
  comM Vibrio campbellii strain DS40M4

52.727

99.798

0.526
  comM Legionella pneumophila strain ERS1305867

51.8

100

0.522
  comM Legionella pneumophila str. Paris

51.8

100

0.522
  comM Glaesserella parasuis strain SC1401

50.701

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.862

100

0.458

Multiple sequence alignment