Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU61_RS20300 Genome accession   NZ_CP155985
Coordinates   4664205..4665725 (+) Length   506 a.a.
NCBI ID   WP_050912494.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain LMG 08106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4659205..4670725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU61_RS20275 (ABFU61_20260) speE 4660179..4661036 (+) 858 WP_050912490.1 polyamine aminopropyltransferase -
  ABFU61_RS20280 (ABFU61_20265) - 4661151..4661933 (-) 783 WP_054088444.1 hypothetical protein -
  ABFU61_RS20285 (ABFU61_20270) - 4662461..4663120 (+) 660 WP_050912492.1 RIO1 family regulatory kinase/ATPase -
  ABFU61_RS20290 (ABFU61_20275) - 4663388..4663762 (-) 375 WP_200902597.1 P-II family nitrogen regulator -
  ABFU61_RS20295 (ABFU61_20280) ubiK 4663917..4664189 (+) 273 WP_040941985.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU61_RS20300 (ABFU61_20285) comM 4664205..4665725 (+) 1521 WP_050912494.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU61_RS20305 (ABFU61_20290) - 4666082..4666591 (+) 510 WP_050912495.1 lipocalin family protein -
  ABFU61_RS20310 (ABFU61_20295) - 4666602..4666778 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU61_RS20315 (ABFU61_20300) - 4667160..4668719 (+) 1560 WP_050911777.1 EAL domain-containing protein -
  ABFU61_RS20320 (ABFU61_20305) - 4669190..4669360 (-) 171 WP_154727132.1 hypothetical protein -
  ABFU61_RS20325 (ABFU61_20310) - 4669374..4670495 (-) 1122 WP_011038953.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53845.56 Da        Isoelectric Point: 8.5244

>NTDB_id=1000752 ABFU61_RS20300 WP_050912494.1 4664205..4665725(+) (comM) [Xanthomonas campestris pv. campestris strain LMG 08106]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARDRQQARAQVPNARMDQATTDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
AIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1000752 ABFU61_RS20300 WP_050912494.1 4664205..4665725(+) (comM) [Xanthomonas campestris pv. campestris strain LMG 08106]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCGATTGCCGGACACGTGCAAGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGGCCGCCGAACTGGCGATCGTCGCGCTCGGCGCCCGCGC
GTTACCCGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGCGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCACGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTAGCCCGCTGGCGGCAACGCCCGTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGAGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCGCTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGCTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCGATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCGCTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTCGCCGCCGCACGCGACCGCCAGCAGGCACGTGCGCAGGTGCCCAA
TGCCCGCATGGATCAGGCCACCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGTGCC
GCCATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCTCTCGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.941

100

0.549
  comM Vibrio campbellii strain DS40M4

53.711

100

0.543
  comM Haemophilus influenzae Rd KW20

53.725

100

0.541
  comM Glaesserella parasuis strain SC1401

53.953

100

0.54
  comM Legionella pneumophila str. Paris

52.894

99.012

0.524
  comM Legionella pneumophila strain ERS1305867

52.894

99.012

0.524
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.462

Multiple sequence alignment