ICEberg
I. Information of ICE
ICEberg ID944
Name ICE6440 This is a predicted ICE derived from literature
OrganismPseudomonas aeruginosa HSV3483
Size (bp)83339
GC content [Genome] (%)62.05
Insertion site-
Function-
Species that ICE can be transferred to-
Nucleotide SequenceMF168944 (complete ICE sequence in this GenBank file)
Replicon-
Coordinates1..83339 
Putative oriT region -
Putative relaxase coordinates: 50052..51914;   Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of ICE6440 is not available.



The graph information of ICE6440 components from MF168944
Complete gene list of ICE6440 from MF168944
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1-316..2244 [+], 1929Integrase
2-2796..3551 [+], 756Hypothetical protein
3-3670..3882 [+], 213Phage transcriptional regulator AlpA
4-3925..4800 [+], 876ParA
5-4784..5032 [+], 249Hypothetical protein
6-5025..6653 [+], 1629Putative ParB
7-6669..7229 [+], 561Hypothetical protein
8-7233..8477 [+], 1245Hypothetical protein
9-8795..9580 [+], 786Integrating conjugative element protein
10-9577..10104 [+], 528Hypothetical protein
11-10178..10618 [+], 441Single-stranded DNA-binding protein
12-10888..12912 [+], 2025DNA topoisomerase III
13-13437..13682 [+], 246Hypothetical protein
14-14011..14223 [+], 213Hypothetical protein
15-14245..14637 [+], 393Hypothetical protein
16-14850..15587 [+], 738Hypothetical protein
17-15682..15960 [+], 279Hypothetical protein
18-16240..17052 [+], 813Hypothetical protein
19-17430..18344 [+], 915Hypothetical protein
20-18399..19097 [+], 699Hypothetical protein
21-19192..19593 [+], 402Hypothetical protein
22-19676..20326 [+], 651Hypothetical protein
23-20391..21512 [+], 1122Hypothetical protein
24-21613..21924 [+], 312Hypothetical protein
25-22062..23117 [+], 1056DEAD/DEAH box helicase
26-23713..25431 [+], 1719Group II intron reverse transcriptase/maturase
27-25598..26758 [+], 1161DEAD/DEAH box helicase
28-26992..27570 [+], 579Conj_PilL superfamily proteinTfc2, T4SS component 
29-27567..28208 [+], 642Hypothetical proteinTfc2, T4SS component 
30-28223..28960 [+], 738Integrating conjugative element proteinTfc3, T4SS component 
31-28960..29547 [+], 588Lytic transglycosylaseTfc4, T4SS component 
32-29544..30092 [+], 549Integrating conjugative element proteinTfc5, T4SS component 
33-30097..32283 [+], 2187Conjugative coupling factor TraD, PFGI-1 classTfc6, T4SS component 
34-32280..33029 [+], 750Integrating conjugative element membrane proteinTfc8, T4SS component 
35-33030..34400 [-], 1371hypothetical protein
36-34562..34942 [+], 381Integrative conjugative element proteinTfc9, T4SS component 
37-34939..35172 [+], 234integrating conjugative element protein
38-35189..35548 [+], 360integrating conjugative element membrane proteinTfc10, T4SS component 
39-35561..35971 [+], 411Conjugative transfer region proteinTfc11, T4SS component 
40-35968..36657 [+], 690integrating conjugative element proteinTfc12, T4SS component 
41-36654..37586 [+], 933Integrating conjugative element proteinTfc13, T4SS component 
42-37576..38994 [+], 1419Integrating conjugative element proteinTfc14, T4SS component 
43-38975..39415 [+], 441Conjugal transfer proteinTfc15, T4SS component 
44-39415..42285 [+], 2871Conjugative transfer ATPaseTfc16, T4SS component 
45-42328..43053 [+], 726DSBA oxidoreductase
46-43240..43734 [+], 495DNA repair protein RadC
47-43878..44324 [+], 447Integrating conjugative element proteinTfc24, T4SS component 
48-44321..45268 [+], 948integrating conjugative element proteinTfc23, T4SS component 
49-45279..46673 [+], 1395integrating conjugative element proteinTfc22, T4SS component 
50-46670..47029 [+], 360Hypothetical protein
51-47045..48568 [+], 1524conjugal transfer protein TraGTfc19, T4SS component 
52-48575..48937 [-], 363Hypothetical protein
53-48965..49423 [-], 459toxin YhaV
54-49423..49740 [-], 318AbrB family transcriptional regulator
55-50052..51914 [+], 1863Integrating conjugative element relaxaseRelaxase, MOBH Family
56-51925..52506 [-], 582Hypothetical protein
57-53075..55960 [-], 2886Transposase
58-56109..58868 [-], 2760Transposase
59-58871..59431 [-], 561TnpR resolvase
60-60844..61857 [-], 1014IntI1 integrase of class I integronsIntegrase 
61-62004..62462 [+], 459Aminoglycoside N-acetyltransferase AAC(6')-Il
62-62615..63415 [+], 801VIM-2 carbapenemaseAR 
63-63509..63973 [+], 465AAC(3)-I family aminoglycoside 3-N-acetyltransferaseAR 
64-64130..64648 [+], 519AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferaseAR 
65-64817..65164 [+], 348QacEdelta1 multidrug efflux protein
66-65158..65997 [+], 840Sul1 sulfonamide-resistant dihydropteroate synthaseAR 
67-66029..66625 [+], 597Orf5 acetyltransferase
68-66649..66936 [+], 288Orf6 protein
69-67868..69889 [-], 2022site-specific DNA-methyltransferase
70-69889..72012 [-], 2124hypothetical protein
71-72022..72828 [-], 807hypothetical protein
72-72825..76046 [-], 3222helicase
73-76059..76967 [-], 909WYL domain-containing protein
74-77247..78137 [+], 891LysR family transcriptional regulator
75-78582..79613 [+], 1032ATP-binding protein
76-79591..82101 [+], 2511Putative serine protease
77-82627..83268 [+], 642LysR family transcriptional regulator
 

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins77Fasta
(1) Botelho J; Grosso F; Quinteira S; Brilhante M; Ramos H; Peixe L (2018). Two decades of blaVIM-2-producing Pseudomonas aeruginosa dissemination: an interplay between mobile genetic elements and successful clones. J Antimicrob Chemother. 73(4):873-882. [PubMed:29373674] experimental in_silico
 
experimental experimental literature
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU